PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.362450.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 211aa    MW: 23905.5 Da    PI: 10.1175
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.362450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.81.4e-19162211151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     kp+++Wt  L  rF++av+ + G ++A+Pk+ile+m+v+gLt+e+v+SHLQ
  Cucsa.362450.1 162 KPKVVWTDFLQYRFLQAVHFI-GLDRAVPKKILEVMNVPGLTRENVASHLQ 211
                     79*******************.****************************9 PP
2Response_reg52.62.5e-1838429109
                     ESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  29 addgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     + d+ +al +l++ +  +Dli++ + m++m+Glel+k+ + e  klp+i++++ +ee+ + +a++ G+  +l+Kpf +++l +
  Cucsa.362450.1   3 FVDPVQALSTLRAGKqsFDLIVTALHMSKMNGLELTKRVNDEF-KLPVIMISTDNEESIMYRAIQEGVALYLVKPFFQNDLKN 84 
                     56788999999777777**********************9999.9*******************************9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011025.815190IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-14384IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521726.97E-183102IPR011006CheY-like superfamily
CDDcd001562.21E-15587No hitNo description
Gene3DG3DSA:3.40.50.23002.0E-19597No hitNo description
Gene3DG3DSA:3.40.50.23002.0E-19137154No hitNo description
SuperFamilySSF466898.24E-14159211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-20160211IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-21162211IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
ASFVDPVQAL STLRAGKQSF DLIVTALHMS KMNGLELTKR VNDEFKLPVI MISTDNEESI  60
MYRAIQEGVA LYLVKPFFQN DLKNIWQFSI TTKSQSKPNP SLTIEETIST NYGEGKLQAF  120
ETHSVSGSNE VISSERKKKK SSIEKDQEKS NGKKEVKSTR KKPKVVWTDF LQYRFLQAVH  180
FIGLDRAVPK KILEVMNVPG LTRENVASHL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-17158211154ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819251e-143LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132651e-143LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022964427.11e-87two-component response regulator ORR22-like
TrEMBLA0A0A0KER84e-61A0A0A0KER8_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-40response regulator 2