PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.360530.1

Common Name

Csa_7G451300

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 290aa MW: 32483.3 Da PI: 5.8397

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.360530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127	9.1e-40	30	129	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+e+am+++++++++r dPv G++++i++lq+q+e kael+ Cucsa.360530.1 30 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYNKAELE 124 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ Cucsa.360530.1 125 IVLHQ 129 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.293	29	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-37	30	125	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSPITHHHHH LSKSSTAPVT TTTSSSTTQA CAACKYQRRK CAPDCILAPY FPHDRQRQFL 60 NAHKLFGVSN ITKIIKNLDP FEKEEAMRTI IFQSDVRSVD PVGGCYRIIR DLQRQIEYNK 120 AELEIVLHQL AICKQQAAAA AAAAAAAAIL EGDPMTGYGG IEHQFVEGYE GEGFVVGENE 180 NGESLEDQEV EVWGIQDSCS SLQLKQAGSV HDFHDIKIHD NNHHQHHHQQ QLLKFQIDHH 240 QDLVHQSEEP MLKMDNMILK EDSDPIQQVQ DQELKGAVDT LFTFPSCDT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-27	23	124	4	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-27	23	124	4	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	0.0	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659803.1	1e-158	PREDICTED: LOB domain-containing protein 22-like, partial
TrEMBL	A0A0A0K9M3	0.0	A0A0A0K9M3_CUCSA; Uncharacterized protein
STRING	XP_004172040.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-55	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Cucsa.360530.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]