PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.360310.5
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 492aa    MW: 54304.1 Da    PI: 7.7603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.360310.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-08373421348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g W+ I +        Rt  ++k++w+++l
   Cucsa.360310.5 373 AWTLVEVIKLVEGVSKCGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 421
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.987366425IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-12368429IPR009057Homeodomain-like
SMARTSM007174.0E-8370423IPR001005SANT/Myb domain
SuperFamilySSF466891.63E-15372431IPR009057Homeodomain-like
CDDcd116608.58E-20372422No hitNo description
PfamPF002491.0E-5373421IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MYIEEVLQKV KQEERLRLTC GSSNYASAYV NGDRKGSDEH GRLPVIDEKL QSNISLQEIT  60
HSISPSLKEN HVNENGSLGD CLKHPDKSVE SESSDALCTT SNPDFSLLKG DVCLDNLSIR  120
ELRECFKATF GRDTTVKDKS WLRRRIVMGL TNSCDIPVSS FIIKEGKFVE EISPNVEGLS  180
TAPTAETLNI ECRVSPSTYS LENKDLHHSE DMELDHGSEG QHDERAAVKR VRKPTRRYIE  240
ELSEVESREY VQKVVSMNKN TISDSVSANS IARPIKKVYS DGGRTVITRL DSLGGSGFQV  300
PCVSRVRRSR PRKDVVGLVF ALPEKDQSPS VTVTDEAEKN LEQKQTTSDN VSDDNTAVVS  360
TTKGGMRRKH HRAWTLVEVI KLVEGVSKCG AGKWSEIKKL SFSSYSYRTS VDLKDKWRNL  420
LKASLVQTPV DEGISSRKHA SISIPAQVLL RVRELAEMHA QIPPSSHGQG KLGGGGVSGS  480
MHEMSSSTLC S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312RRSRPRK
2306313RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659628.10.0PREDICTED: uncharacterized protein LOC101203003 isoform X1
RefseqXP_011659629.10.0PREDICTED: uncharacterized protein LOC101203003 isoform X1
TrEMBLA0A1S4E4D20.0A0A1S4E4D2_CUCME; uncharacterized protein LOC103500701 isoform X4
STRINGXP_004141697.10.0(Cucumis sativus)
STRINGXP_004167883.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-42TRF-like 6