PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.360310.3

Common Name

Csa_7G450550

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 556aa MW: 61579.9 Da PI: 5.0856

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.360310.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.8e-08	491	539	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g W+ I + Rt ++k++w+++l Cucsa.360310.3 491 AWTLVEVIKLVEGVSKCGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 539 7*************************9999999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.987	484	543	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-12	486	547	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-8	488	541	IPR001005	SANT/Myb domain
CDD	cd11660	1.51E-19	490	540	No hit	No description
SuperFamily	SSF46689	2.12E-15	490	549	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-5	491	539	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0005840	Cellular Component	ribosome
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
METEVGIVEN ERKIVESGAT QDGSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE 60 DLLEDDKNEK VEDAGQIVGC IPKEGTLFGK PHVEVLNDTP GLLQSDTFEA AADYNARLEY 120 IEEVLQKVKQ EERLRLTCGS SNYASAYVNG DRKGSDEHGR LPVIDEKLQS NISLQEITHS 180 ISPSLKENHV NENGSLGDCL KHPDKSVESE SSDALCTTSN PDFSLLKGDV CLDNLSIREL 240 RECFKATFGR DTTVKDKSWL RRRIVMGLTN SCDIPVSSFI IKEGKFVEEI SPNVEGLSTA 300 PTAETLNIEC RVSPSTYSLE NKDLHHSEDM ELDHGSEGQH DERAAVKRVR KPTRRYIEEL 360 SEVESREYVQ KVVSMNKNTI SDSVSANSIA RPIKKVYSDG GRTVITRLDS LGGSGFQVPC 420 VSRVRRSRPR KDVVGLVFAL PEKDQSPSVT VTDEAEKNLE QKQTTSDNVS DDNTAVVSTT 480 KGGMRRKHHR AWTLVEVIKL VEGVSKCGAG KWSEIKKLSF SSYSYRTSVD LKDKWRNLLK 540 ASLVQTPVDE GVRSI*

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

METEVGIVEN ERKIVESGAT QDGSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE  60
DLLEDDKNEK VEDAGQIVGC IPKEGTLFGK PHVEVLNDTP GLLQSDTFEA AADYNARLEY  120
IEEVLQKVKQ EERLRLTCGS SNYASAYVNG DRKGSDEHGR LPVIDEKLQS NISLQEITHS  180
ISPSLKENHV NENGSLGDCL KHPDKSVESE SSDALCTTSN PDFSLLKGDV CLDNLSIREL  240
RECFKATFGR DTTVKDKSWL RRRIVMGLTN SCDIPVSSFI IKEGKFVEEI SPNVEGLSTA  300
PTAETLNIEC RVSPSTYSLE NKDLHHSEDM ELDHGSEGQH DERAAVKRVR KPTRRYIEEL  360
SEVESREYVQ KVVSMNKNTI SDSVSANSIA RPIKKVYSDG GRTVITRLDS LGGSGFQVPC  420
VSRVRRSRPR KDVVGLVFAL PEKDQSPSVT VTDEAEKNLE QKQTTSDNVS DDNTAVVSTT  480
KGGMRRKHHR AWTLVEVIKL VEGVSKCGAG KWSEIKKLSF SSYSYRTSVD LKDKWRNLLK  540
ASLVQTPVDE GVRSI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	424	430	RRSRPRK
2	424	431	RRSRPRKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	0.0	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659628.1	0.0	PREDICTED: uncharacterized protein LOC101203003 isoform X1
Refseq	XP_011659629.1	0.0	PREDICTED: uncharacterized protein LOC101203003 isoform X1
TrEMBL	A0A0A0KCL9	0.0	A0A0A0KCL9_CUCSA; Uncharacterized protein
STRING	XP_004141697.1	0.0	(Cucumis sativus)
STRING	XP_004167883.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-86	TRF-like 6

Link Out ? help Back to Top
Phytozome	Cucsa.360310.3

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]