PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.360310.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 571aa    MW: 62906.6 Da    PI: 5.9156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.360310.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.1e-08452500348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g W+ I +        Rt  ++k++w+++l
   Cucsa.360310.2 452 AWTLVEVIKLVEGVSKCGAGKWSEIKKLSFssySYRTSVDLKDKWRNLL 500
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.987445504IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-12447508IPR009057Homeodomain-like
SMARTSM007174.0E-8449502IPR001005SANT/Myb domain
SuperFamilySSF466891.96E-15451510IPR009057Homeodomain-like
CDDcd116601.01E-19451501No hitNo description
PfamPF002491.2E-5452500IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MKVDGDGRFV PATDDEVMEV EDLLEDDKNE KVEDAGQIVG CIPKEGTLFG KPHVEVLNDT  60
PGLLQSDTFE AAADYNARLE YIEEVLQKVK QEERLRLTCG SSNYASAYVN GDRKGSDEHG  120
RLPVIDEKLQ SNISLQEITH SISPSLKENH VNENGSLGDC LKHPDKSVES ESSDALCTTS  180
NPDFSLLKGD VCLDNLSIRE LRECFKATFG RDTTVKDKSW LRRRIVMGLT NSCDIPVSSF  240
IIKEGKFVEE ISPNVEGLST APTAETLNIE CRVSPSTYSL ENKDLHHSED MELDHGSEGQ  300
HDERAAVKRV RKPTRRYIEE LSEVESREYV QKVVSMNKNT ISDSVSANSI ARPIKKVYSD  360
GGRTVITRLD SLGGSGFQVP CVSRVRRSRP RKDVVGLVFA LPEKDQSPSV TVTDEAEKNL  420
EQKQTTSDNV SDDNTAVVST TKGGMRRKHH RAWTLVEVIK LVEGVSKCGA GKWSEIKKLS  480
FSSYSYRTSV DLKDKWRNLL KASLVQTPVD EGISSRKHAS ISIPAQVLLR VRELAEMHAQ  540
IPPSSHGQGK LGGGGVSGSM HEMSSSTLCS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385391RRSRPRK
2385392RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659630.10.0PREDICTED: uncharacterized protein LOC101203003 isoform X2
TrEMBLA0A0A0KCL90.0A0A0A0KCL9_CUCSA; Uncharacterized protein
STRINGXP_004141697.10.0(Cucumis sativus)
STRINGXP_004167883.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.26e-87TRF-like 6