PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.360250.1
Common NameCsa_7G450500, LOC101211590
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 557aa    MW: 62372.6 Da    PI: 7.5968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.360250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS251.14.2e-771625462373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal....ppsetseknsseelaalkl...fsevs 88 
                     ++lL  cA+a+ +gd++++++lL+ l+elasp+gd+++Rla + ++ALa +l++ s+s+ +++     +p + +   s++  ++++    f+evs
  Cucsa.360250.1 162 EQLLNPCANAIVKGDATRVHHLLCVLQELASPTGDANHRLADHGLRALAYHLSSnSSSSSFSSYsstvAPFTFA---STDPRFFQRSlikFHEVS 253
                     689*************************************************9954433333331100333343...3333333333467***** PP

            GRAS  89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfA 169
                     P++ f + +aN+ Il  +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T++++  ++               ++ +rL +fA
  Cucsa.360250.1 254 PWFAFPNNIANSSILHILSEEsnrpRNLHILDIGVSHGVQWPTLLEALTRRSgGPPPLIRLTVIAPTIEHdqntetpfsIGPPGDNISSRLLSFA 348
                     ******************9998888899************************55566*******9976667666777766677899********* PP

            GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerfleal 261
                     ++l++++++n l  ++l++l+ ++++ +++E l+V+ +++lh+l    +s ++er+e+L+ +++++Pk v+++e+++ ++ +   +F  +f + +
  Cucsa.360250.1 349 KSLNINLQINRLDIHSLQSLNSQAINKSRDEILIVCAQFRLHQLK---HSAPDERQEFLENLRKMEPKAVILSENNMGCSCSkcgNFEMGFRRGV 440
                     ************999*****************************8...77777789********************7774333459********* PP

            GRAS 262 eyysalfdsleakl.preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                     ey+++++ds++a + +reseer+++E e     + +++ +   e    +e+++kW er++++GF+  +++e++ ++a++ +r+++ ++++r+e++
  Cucsa.360250.1 441 EYVWKFLDSTSAAFkGRESEERRVMEGE-----AAKALRNVDGE---MNEEKGKWCERMRNVGFERKRFGEDTIDTARASMRRYDnNWEMRMEDK 527
                     **********665415556666666666.....55555544444...57789*********************************9999****** PP

            GRAS 355 sgslvlgWkdrpLvsvSaW 373
                     +g++ l Wk++p+ ++S+W
  Cucsa.360250.1 528 DGCVGLWWKGQPVSFCSFW 546
                     ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.107135526IPR005202Transcription factor GRAS
PfamPF035141.4E-74162546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MTIEETGPNH PSDHILDWLE DSVPFFSSFL DETSNSSSIN CYQWWDENQD TGEDLINGCL  60
SNSPTTVVST RQPNTPTSHS LTPSDLTKKR KAPDDSVHKK SQTHQNPRKN QNNQSKNSAD  120
KGSGAVEGVT VMKKSVGNKK NASKSTGNNY NSGSNKEGRW AEQLLNPCAN AIVKGDATRV  180
HHLLCVLQEL ASPTGDANHR LADHGLRALA YHLSSNSSSS SFSSYSSTVA PFTFASTDPR  240
FFQRSLIKFH EVSPWFAFPN NIANSSILHI LSEESNRPRN LHILDIGVSH GVQWPTLLEA  300
LTRRSGGPPP LIRLTVIAPT IEHDQNTETP FSIGPPGDNI SSRLLSFAKS LNINLQINRL  360
DIHSLQSLNS QAINKSRDEI LIVCAQFRLH QLKHSAPDER QEFLENLRKM EPKAVILSEN  420
NMGCSCSKCG NFEMGFRRGV EYVWKFLDST SAAFKGRESE ERRVMEGEAA KALRNVDGEM  480
NEEKGKWCER MRNVGFERKR FGEDTIDTAR ASMRRYDNNW EMRMEDKDGC VGLWWKGQPV  540
SFCSFWNIIS AKRDLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B8e-3815854630418Protein SHORT-ROOT
5b3h_E8e-3815854630418Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141813.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A0A0KCK60.0A0A0A0KCK6_CUCSA; Uncharacterized protein
STRINGXP_004155968.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-161GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  5. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]