PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.359880.1 | ||||||||
Common Name | Csa_7G448110, LOC101210678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 390aa MW: 43255.9 Da PI: 4.7005 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Cucsa.359880.1 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 163 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.03E-32 | 114 | 172 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-22 | 114 | 173 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.092 | 114 | 171 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-37 | 114 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 114 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-12 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MCGGAIISGF IPPIRSRRVT GEHLWPNLKQ PAFGNQLSKP VKSDIIDIDD DFETDFQHFK 60 DDSDLEFDVE ELLDTKPLAF SAAGDHPVPS ARASKSVEFS GQAEKSAKRK RKNQYRGIRQ 120 RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDAEARR IRGKKAKVNF PDETPRTSGK 180 RSAKANLQEP LPKTSLAKTQ PDLIQNNNFV NNSDEAYYST MGFLEEKPLT NQLPNMDSLA 240 TNGDIVIKTS PASSDVVPMY FNSDQGSNSF DYSDFGWGEQ GARTPEISSF LSSAMENEDS 300 HFVEDASPKK KVKYSPENTV VSQGSEKTLS EELSSFESEM KYFQMPYLDG SWDASMDAFL 360 AGETGNQDGG NSVDLWTFDD LAGMVGNVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 114 | 171 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 4e-21 | 113 | 179 | 13 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681805 | 0.0 | LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141728.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A0A0K9C0 | 0.0 | A0A0A0K9C0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141728.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 2e-81 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.359880.1 |
Entrez Gene | 101210678 |
Publications ? help Back to Top | |||
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