PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.359250.4 | ||||||||
Common Name | Csa_7G447000, LOC101218545 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 703aa MW: 78691.1 Da PI: 6.3254 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63 | 4.5e-20 | 47 | 102 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ ++t+eq++e+e lF+++++p++++r++L++klgL+ +q+k+WFqNrR++ k Cucsa.359250.4 47 KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIK 102 678889**********************************************9877 PP | |||||||
2 | START | 197.1 | 7.9e-62 | 224 | 440 | 5 | 205 |
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 +a +e+vk+ +++ep+Wv+s+ e +n+d+++++++ ++ +++ea+r++gvv+++l++lv++++d+ qW+e+++ ka+t+ev+ +g Cucsa.359250.4 224 RAIEEVVKMGDSDEPLWVRSVetgrELLNYDVYMKELAVGNErgkREVEASRETGVVFADLHRLVQSFMDVV-QWKEMFPsmisKASTMEVVFNG 317 6889********************999**********98887999***************************.********************** PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 ga+qlm+aelq+l+p+ p R+ f+R+++ql+ g+wv++dvS+d + +ss+ R++++pSg++i++ s+gh+kvtwveh+++ + Cucsa.359250.4 318 dgnnrdGAVQLMFAELQMLTPTIPpREIFFIRSCKQLSPGKWVVADVSIDKVGDHV-DSSSSRCRKRPSGCIIQDQSDGHCKVTWVEHWECHKIG 411 **********************999*****************************99.9************************************* PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqce 205 h ++r +v+sgl++ga +w++tlq +ce Cucsa.359250.4 412 LHTIYRTIVNSGLIFGATHWMSTLQMHCE 440 ****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-20 | 35 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.31E-18 | 36 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 44 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-18 | 46 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.20E-17 | 47 | 102 | No hit | No description |
Pfam | PF00046 | 1.3E-17 | 47 | 102 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 79 | 102 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 36.144 | 211 | 444 | IPR002913 | START domain |
CDD | cd08875 | 4.65E-94 | 215 | 440 | No hit | No description |
SuperFamily | SSF55961 | 6.2E-29 | 217 | 440 | No hit | No description |
SMART | SM00234 | 2.7E-54 | 220 | 441 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-49 | 224 | 440 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.6E-7 | 271 | 439 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.18E-9 | 484 | 689 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MDVEADTTGR REDSCSDNSE PAGSRSAEDL GVDPDDEDED KLQGNTKKRK NRHTSEQIRE 60 MEMLFKESPH PDEKQRQQLS EKLGLSCKQI KFWFQNRRTQ IKAIHERHEN ALLKGEMEKL 120 REENQAMREM ISKSSCTKGC CSASTNSLDA IFTTSDQQQQ QLVTEIARLK AEVERLRTAL 180 DKYAPAGTEN NKEEGGIERP GRNLEKSKSI FGLEKGRVML IGKRAIEEVV KMGDSDEPLW 240 VRSVETGREL LNYDVYMKEL AVGNERGKRE VEASRETGVV FADLHRLVQS FMDVVQWKEM 300 FPSMISKAST MEVVFNGDGN NRDGAVQLMF AELQMLTPTI PPREIFFIRS CKQLSPGKWV 360 VADVSIDKVG DHVDSSSSRC RKRPSGCIIQ DQSDGHCKVT WVEHWECHKI GLHTIYRTIV 420 NSGLIFGATH WMSTLQMHCE WQVFFMATNV PMKDSTGITT VGGRKSVLRL AQRMTSSIYQ 480 AIGASNSHTW TKVQSKIGET IRIASRKNLK NPHEPTGLIL CAVASIWLPV SPKLLFEFLI 540 DEARRPEWDV MLSSGQAEML ANFAKGQNRG NAVTIQAVKS DETNKWILQD SLTNEYESTV 600 VYAQVDMNGM KSVMAGFDSG NITTLPTGFS ILPDGHPTRP LVISSSKEER ETRGGSLLTV 660 ASQILVSPSP TAETTSQSVE YVNNIMSHTL ENIKASLQGE DD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681805 | 1e-176 | LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067. | |||
GenBank | LN713255 | 1e-176 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141841.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A0A0K6N0 | 0.0 | A0A0A0K6N0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141841.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.359250.4 |
Entrez Gene | 101218545 |
Publications ? help Back to Top | |||
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