PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.359250.4
Common NameCsa_7G447000, LOC101218545
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 703aa    MW: 78691.1 Da    PI: 6.3254
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.359250.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.5e-2047102156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++ ++t+eq++e+e lF+++++p++++r++L++klgL+ +q+k+WFqNrR++ k
  Cucsa.359250.4  47 KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIK 102
                     678889**********************************************9877 PP

2START197.17.9e-622244405205
                     HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
           START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                     +a +e+vk+ +++ep+Wv+s+    e +n+d+++++++ ++    +++ea+r++gvv+++l++lv++++d+  qW+e+++    ka+t+ev+ +g
  Cucsa.359250.4 224 RAIEEVVKMGDSDEPLWVRSVetgrELLNYDVYMKELAVGNErgkREVEASRETGVVFADLHRLVQSFMDVV-QWKEMFPsmisKASTMEVVFNG 317
                     6889********************999**********98887999***************************.********************** PP

                     ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
           START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                           ga+qlm+aelq+l+p+ p R+  f+R+++ql+ g+wv++dvS+d   +   +ss+ R++++pSg++i++ s+gh+kvtwveh+++ +  
  Cucsa.359250.4 318 dgnnrdGAVQLMFAELQMLTPTIPpREIFFIRSCKQLSPGKWVVADVSIDKVGDHV-DSSSSRCRKRPSGCIIQDQSDGHCKVTWVEHWECHKIG 411
                     **********************999*****************************99.9************************************* PP

                     XHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 177 phwllrslvksglaegaktwvatlqrqce 205
                      h ++r +v+sgl++ga +w++tlq +ce
  Cucsa.359250.4 412 LHTIYRTIVNSGLIFGATHWMSTLQMHCE 440
                     ****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-203598IPR009057Homeodomain-like
SuperFamilySSF466891.31E-1836103IPR009057Homeodomain-like
PROSITE profilePS5007117.7544104IPR001356Homeobox domain
SMARTSM003892.5E-1846108IPR001356Homeobox domain
CDDcd000861.20E-1747102No hitNo description
PfamPF000461.3E-1747102IPR001356Homeobox domain
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PROSITE profilePS5084836.144211444IPR002913START domain
CDDcd088754.65E-94215440No hitNo description
SuperFamilySSF559616.2E-29217440No hitNo description
SMARTSM002342.7E-54220441IPR002913START domain
PfamPF018521.1E-49224440IPR002913START domain
Gene3DG3DSA:3.30.530.209.6E-7271439IPR023393START-like domain
SuperFamilySSF559611.18E-9484689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MDVEADTTGR REDSCSDNSE PAGSRSAEDL GVDPDDEDED KLQGNTKKRK NRHTSEQIRE  60
MEMLFKESPH PDEKQRQQLS EKLGLSCKQI KFWFQNRRTQ IKAIHERHEN ALLKGEMEKL  120
REENQAMREM ISKSSCTKGC CSASTNSLDA IFTTSDQQQQ QLVTEIARLK AEVERLRTAL  180
DKYAPAGTEN NKEEGGIERP GRNLEKSKSI FGLEKGRVML IGKRAIEEVV KMGDSDEPLW  240
VRSVETGREL LNYDVYMKEL AVGNERGKRE VEASRETGVV FADLHRLVQS FMDVVQWKEM  300
FPSMISKAST MEVVFNGDGN NRDGAVQLMF AELQMLTPTI PPREIFFIRS CKQLSPGKWV  360
VADVSIDKVG DHVDSSSSRC RKRPSGCIIQ DQSDGHCKVT WVEHWECHKI GLHTIYRTIV  420
NSGLIFGATH WMSTLQMHCE WQVFFMATNV PMKDSTGITT VGGRKSVLRL AQRMTSSIYQ  480
AIGASNSHTW TKVQSKIGET IRIASRKNLK NPHEPTGLIL CAVASIWLPV SPKLLFEFLI  540
DEARRPEWDV MLSSGQAEML ANFAKGQNRG NAVTIQAVKS DETNKWILQD SLTNEYESTV  600
VYAQVDMNGM KSVMAGFDSG NITTLPTGFS ILPDGHPTRP LVISSSKEER ETRGGSLLTV  660
ASQILVSPSP TAETTSQSVE YVNNIMSHTL ENIKASLQGE DD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818051e-176LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132551e-176LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141841.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0A0K6N00.0A0A0A0K6N0_CUCSA; Uncharacterized protein
STRINGXP_004141841.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]