PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.359250.3 | ||||||||
Common Name | Csa_7G447000, LOC101218545 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 739aa MW: 82354.3 Da PI: 6.5654 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.8e-20 | 83 | 138 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ ++t+eq++e+e lF+++++p++++r++L++klgL+ +q+k+WFqNrR++ k Cucsa.359250.3 83 KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIK 138 678889**********************************************9877 PP | |||||||
2 | START | 197 | 8.8e-62 | 260 | 476 | 5 | 205 |
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 +a +e+vk+ +++ep+Wv+s+ e +n+d+++++++ ++ +++ea+r++gvv+++l++lv++++d+ qW+e+++ ka+t+ev+ +g Cucsa.359250.3 260 RAIEEVVKMGDSDEPLWVRSVetgrELLNYDVYMKELAVGNErgkREVEASRETGVVFADLHRLVQSFMDVV-QWKEMFPsmisKASTMEVVFNG 353 6889********************999**********98887999***************************.********************** PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 ga+qlm+aelq+l+p+ p R+ f+R+++ql+ g+wv++dvS+d + +ss+ R++++pSg++i++ s+gh+kvtwveh+++ + Cucsa.359250.3 354 dgnnrdGAVQLMFAELQMLTPTIPpREIFFIRSCKQLSPGKWVVADVSIDKVGDHV-DSSSSRCRKRPSGCIIQDQSDGHCKVTWVEHWECHKIG 447 **********************999*****************************99.9************************************* PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqce 205 h ++r +v+sgl++ga +w++tlq +ce Cucsa.359250.3 448 LHTIYRTIVNSGLIFGATHWMSTLQMHCE 476 ****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-20 | 71 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.43E-18 | 72 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-18 | 82 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.72E-18 | 83 | 138 | No hit | No description |
Pfam | PF00046 | 1.4E-17 | 83 | 138 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 36.144 | 247 | 480 | IPR002913 | START domain |
CDD | cd08875 | 1.40E-93 | 251 | 476 | No hit | No description |
SuperFamily | SSF55961 | 6.83E-29 | 253 | 476 | No hit | No description |
SMART | SM00234 | 2.7E-54 | 256 | 477 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-49 | 260 | 476 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.0E-6 | 307 | 475 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.26E-9 | 520 | 725 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MAVVMSDNHA SRRLKTLPSS PALSLTLAGV FGNAAPMDVE ADTTGRREDS CSDNSEPAGS 60 RSAEDLGVDP DDEDEDKLQG NTKKRKNRHT SEQIREMEML FKESPHPDEK QRQQLSEKLG 120 LSCKQIKFWF QNRRTQIKAI HERHENALLK GEMEKLREEN QAMREMISKS SCTKGCCSAS 180 TNSLDAIFTT SDQQQQQLVT EIARLKAEVE RLRTALDKYA PAGTENNKEE GGIERPGRNL 240 EKSKSIFGLE KGRVMLIGKR AIEEVVKMGD SDEPLWVRSV ETGRELLNYD VYMKELAVGN 300 ERGKREVEAS RETGVVFADL HRLVQSFMDV VQWKEMFPSM ISKASTMEVV FNGDGNNRDG 360 AVQLMFAELQ MLTPTIPPRE IFFIRSCKQL SPGKWVVADV SIDKVGDHVD SSSSRCRKRP 420 SGCIIQDQSD GHCKVTWVEH WECHKIGLHT IYRTIVNSGL IFGATHWMST LQMHCEWQVF 480 FMATNVPMKD STGITTVGGR KSVLRLAQRM TSSIYQAIGA SNSHTWTKVQ SKIGETIRIA 540 SRKNLKNPHE PTGLILCAVA SIWLPVSPKL LFEFLIDEAR RPEWDVMLSS GQAEMLANFA 600 KGQNRGNAVT IQAVKSDETN KWILQDSLTN EYESTVVYAQ VDMNGMKSVM AGFDSGNITT 660 LPTGFSILPD GHPTRPLVIS SSKEERETRG GSLLTVASQI LVSPSPTAET TSQSVEYVNN 720 IMSHTLENIK ASLQGEDD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681805 | 1e-176 | LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067. | |||
GenBank | LN713255 | 1e-176 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141841.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A0A0K6N0 | 0.0 | A0A0A0K6N0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141841.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.359250.3 |
Entrez Gene | 101218545 |
Publications ? help Back to Top | |||
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