PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.359250.1
Common NameCsa_7G447000, LOC101218545
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 743aa    MW: 82872.9 Da    PI: 6.5654
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.359250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.8e-2083138156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++ ++t+eq++e+e lF+++++p++++r++L++klgL+ +q+k+WFqNrR++ k
  Cucsa.359250.1  83 KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIK 138
                     678889**********************************************9877 PP
2START185.82.3e-582604805205
                     HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
           START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                     +a +e+vk+ +++ep+Wv+s+    e +n+d+++++++ ++    +++ea+r++gvv+++l++lv++++d+  qW+e+++    ka+t+ev+ +g
  Cucsa.359250.1 260 RAIEEVVKMGDSDEPLWVRSVetgrELLNYDVYMKELAVGNErgkREVEASRETGVVFADLHRLVQSFMDVV-QWKEMFPsmisKASTMEVVFNG 353
                     6889********************999**********98887999***************************.********************** PP

                     ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE....EEEEE-EE- CS
           START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk....vtwvehvdl 172
                           ga+qlm+aelq+l+p+ p R+  f+R+++ql+ g+wv++dvS+d   +   +ss+ R++++pSg++i++ s+gh+k    vtwveh+++
  Cucsa.359250.1 354 dgnnrdGAVQLMFAELQMLTPTIPpREIFFIRSCKQLSPGKWVVADVSIDKVGDHV-DSSSSRCRKRPSGCIIQDQSDGHCKgwfqVTWVEHWEC 447
                     **********************999*****************************99.9**********************865555********* PP

                     -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 173 kgrlphwllrslvksglaegaktwvatlqrqce 205
                      +   h ++r +v+sgl++ga +w++tlq +ce
  Cucsa.359250.1 448 HKIGLHTIYRTIVNSGLIFGATHWMSTLQMHCE 480
                     ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-2071134IPR009057Homeodomain-like
SuperFamilySSF466891.43E-1872139IPR009057Homeodomain-like
PROSITE profilePS5007117.7580140IPR001356Homeobox domain
SMARTSM003892.5E-1882144IPR001356Homeobox domain
PfamPF000461.4E-1783138IPR001356Homeobox domain
CDDcd000869.15E-1883138No hitNo description
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PROSITE profilePS5084834.037247484IPR002913START domain
CDDcd088752.45E-91251480No hitNo description
SuperFamilySSF559611.06E-25253480No hitNo description
SMARTSM002343.9E-50256481IPR002913START domain
PfamPF018522.8E-46260480IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-4307479IPR023393START-like domain
SuperFamilySSF559612.2E-9524729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MAVVMSDNHA SRRLKTLPSS PALSLTLAGV FGNAAPMDVE ADTTGRREDS CSDNSEPAGS  60
RSAEDLGVDP DDEDEDKLQG NTKKRKNRHT SEQIREMEML FKESPHPDEK QRQQLSEKLG  120
LSCKQIKFWF QNRRTQIKAI HERHENALLK GEMEKLREEN QAMREMISKS SCTKGCCSAS  180
TNSLDAIFTT SDQQQQQLVT EIARLKAEVE RLRTALDKYA PAGTENNKEE GGIERPGRNL  240
EKSKSIFGLE KGRVMLIGKR AIEEVVKMGD SDEPLWVRSV ETGRELLNYD VYMKELAVGN  300
ERGKREVEAS RETGVVFADL HRLVQSFMDV VQWKEMFPSM ISKASTMEVV FNGDGNNRDG  360
AVQLMFAELQ MLTPTIPPRE IFFIRSCKQL SPGKWVVADV SIDKVGDHVD SSSSRCRKRP  420
SGCIIQDQSD GHCKGWFQVT WVEHWECHKI GLHTIYRTIV NSGLIFGATH WMSTLQMHCE  480
WQVFFMATNV PMKDSTGITT VGGRKSVLRL AQRMTSSIYQ AIGASNSHTW TKVQSKIGET  540
IRIASRKNLK NPHEPTGLIL CAVASIWLPV SPKLLFEFLI DEARRPEWDV MLSSGQAEML  600
ANFAKGQNRG NAVTIQAVKS DETNKWILQD SLTNEYESTV VYAQVDMNGM KSVMAGFDSG  660
NITTLPTGFS ILPDGHPTRP LVISSSKEER ETRGGSLLTV ASQILVSPSP TAETTSQSVE  720
YVNNIMSHTL ENIKASLQGE DD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818051e-176LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132551e-176LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141841.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0A0K6N00.0A0A0A0K6N0_CUCSA; Uncharacterized protein
STRINGXP_004141841.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]