PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.356550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 48aa MW: 5374.96 Da PI: 9.8132 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.7e-07 | 1 | 11 | 15 | 25 |
-TTTTT-SS-S CS zf-CCCH 15 CkyGdrCkFaH 25 C+yG+rCkF H Cucsa.356550.1 1 CQYGERCKFLH 11 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.826 | 1 | 14 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-4 | 1 | 11 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 1 | 14 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 48 aa Download sequence Send to blast |
CQYGERCKFL HATQQAQQQK PNPFGFGVPN NGQSKAVADF GSKQNQYK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681808 | 2e-67 | LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012. | |||
GenBank | LN713256 | 2e-67 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011660212.1 | 3e-26 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2 | ||||
TrEMBL | A0A1S3B837 | 3e-22 | A0A1S3B837_CUCME; zinc finger CCCH domain-containing protein 16 isoform X2 | ||||
TrEMBL | A0A1S3B9C9 | 3e-22 | A0A1S3B9C9_CUCME; zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
STRING | XP_004139162.1 | 8e-26 | (Cucumis sativus) |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.356550.1 |