PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.353130.1

Common Name

Csa_4G645820, LOC101212868

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 262aa MW: 28821.7 Da PI: 7.5907

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.353130.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5e-20	109	163	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Le+ F++++ +s +++++LA++l+L rqV vWFqNrRa+ k Cucsa.353130.1 109 RKKLRLTKHQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTK 163 78889************************************************98 PP
2	HD-ZIP_I/II	119.8	1.5e-38	109	197	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q+++LE++F+e++ L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++lkeen+rL+ke +eL+ + Cucsa.353130.1 109 RKKLRLTKHQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELK-S 197 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.491	105	165	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-18	107	173	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-17	107	169	IPR001356	Homeobox domain
CDD	cd00086	9.08E-17	108	166	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-18	108	171	IPR009057	Homeodomain-like
Pfam	PF00046	1.6E-17	109	163	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	140	163	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.2E-8	165	198	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	9.6E-19	165	208	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDTDCNTGLL LGLGRVSGHN INASVRSELP ALNKKKLQQV LKFDDDILPS LTLGLSFVVD 60 TATEDGCSGS PVSSFSNSSG FKRERAGEEV AETEECMKVG EEDEEGSPRK KLRLTKHQSA 120 ILEDNFKEHS SLSPKQKQDL ARQLNLRPRQ VEVWFQNRRA RTKLKQTEMD CELLKKCCEK 180 LKEENTRLQK ELQELKSLKL TPPPFCMQLQ AATLTVCPSC ESSICGGSSS GGDASPANNF 240 SIGSKPQFLK FPFNHPSAAC N*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	165	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	1e-158	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	1e-158	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141416.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT9-like
Swissprot	P46604	2e-69	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A0A0L3X3	0.0	A0A0A0L3X3_CUCSA; Uncharacterized protein
STRING	XP_004141416.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-40	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.353130.1
Entrez Gene	101212868

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]