PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.352730.1 | ||||||||
Common Name | Csa_4G642430, LOC101208953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22368.3 Da PI: 6.7658 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.8 | 1.7e-28 | 2 | 100 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+ + p++q +++ +++k+FG+s +l++++a+p ++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ Cucsa.352730.1 2 SCNGCRVLRKGCSEACVLRSSLhwidsPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kael 94 +a++ Cucsa.352730.1 97 AADT 100 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.408 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-24 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEACVLR SSLHWIDSPE AQGNATLFLA KFFGRSDLLS FISAVPYHQR 60 PALFQSLLFE ACGRTVNPVS GAVGLLSTGN WHVCQAAADT ILNGGVLRPI PGIEISANPT 120 PNLDDSSLTF NTDVWTTTTV HNLQFYPSTP SDFRCLPDLS LGRAKNHHPL ENRRSLDSEE 180 SVMTSFGSGD LGDQRKETKL LNLFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141401.1 | 1e-151 | PREDICTED: LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 3e-61 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A0A0L3S5 | 1e-150 | A0A0A0L3S5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141401.1 | 1e-150 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-62 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.352730.1 |
Entrez Gene | 101208953 |
Publications ? help Back to Top | |||
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