PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.352410.3
Common NameCsa_4G641520
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 343aa    MW: 36939.5 Da    PI: 10.5686
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.352410.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.22.2e-10321340322
                     -SS-EEEEEEE--TT-SS-E CS
            WRKY   3 DgynWrKYGqKevkgsefpr 22 
                     D y+WrKYGqK++kgs++pr
  Cucsa.352410.3 321 DDYSWRKYGQKPIKGSPHPR 340
                     99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.4E-17271317IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-9308340IPR003657WRKY domain
PROSITE profilePS5081112.232314342IPR003657WRKY domain
SuperFamilySSF1182909.29E-8317340IPR003657WRKY domain
PfamPF031061.9E-6321340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLLLNNNMAV ELLVGFGDAT TSNHFTPNME ENAAVSAVQE AASAGIQSVQ NFLRLMSHTT  60
NHQHSQHDSS TSSTPNNGYQ AVADSVVNKF KKVISLLDRN RTGHARFRRA PVLTTTTTTT  120
TTPPPPPPPK VKPQHQDPSS SSPISVPPVQ VKKQESVSAF KVYCPTPSSV VRLPPLPHNN  180
PHQPSHPSNT FQAQQNTSSV VLKNGSVDRK DATTTINFAA SPPISAANSY ISSLTGDTES  240
LQPSLSSGFQ FTHMSQVSSA GKPPLSSSSL KRKCNSMEDS AMKCGSSSGR CHCSKKSRKN  300
RIKRVIRVPA VSSKLADIPP DDYSWRKYGQ KPIKGSPHPR LE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840270.0GU984027.1 Cucumis sativus WRKY protein (WRKY33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652902.10.0PREDICTED: probable WRKY transcription factor 7-like isoform X1
TrEMBLA0A0A0L0C50.0A0A0A0L0C5_CUCSA; Uncharacterized protein
STRINGXP_004172480.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-55WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]