PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.350850.2 | ||||||||
Common Name | Csa_1G267770, LOC101213687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARR-B | ||||||||
Protein Properties | Length: 679aa MW: 74125.3 Da PI: 7.2618 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.1 | 4.7e-24 | 208 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtP..ktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qLG + k P k+il+lm+v+gLt+e+v+SHLQkYRl Cucsa.350850.2 208 KPRVVWSVELHRKFVSAVNQLGLESKLRPcrKKILDLMNVEGLTRENVASHLQKYRL 264 79*******************99999888779************************8 PP | |||||||
2 | Response_reg | 83.5 | 6.4e-28 | 23 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+++l+k +y +v++++++ eal++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ e++ + + G Cucsa.350850.2 23 VLAVDDDPICLKVLESLLRKCQY-HVTTTKQSIEALRMLRENRnkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTELVMKGIAHG 115 799********************.***************999889*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + Cucsa.350850.2 116 ACDYLLKPVRIEELKN 131 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.0E-162 | 2 | 663 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 5.8E-44 | 20 | 156 | No hit | No description |
SuperFamily | SSF52172 | 6.55E-38 | 20 | 145 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.8E-34 | 21 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 45.279 | 22 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.3E-25 | 23 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.66E-30 | 24 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-27 | 205 | 269 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-16 | 206 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-20 | 208 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.3E-6 | 210 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MVEKRRKVGD DGATDHFPVG MRVLAVDDDP ICLKVLESLL RKCQYHVTTT KQSIEALRML 60 RENRNKFDLV ISDVNMPDMD GFKLLELVGL EMDLPVIMLS AHSDTELVMK GIAHGACDYL 120 LKPVRIEELK NIWQHVIRRK KLEPKAKNKF PSQNKVQNGG NEVEQGFSPT SNADSAKFNR 180 KRKDQDDDDD DEGKENGLDS DDPSNQKKPR VVWSVELHRK FVSAVNQLGL ESKLRPCRKK 240 ILDLMNVEGL TRENVASHLQ KYRLYLKRIS NVASQQANMV ATFGSKDGTY MRMGSLDGYG 300 DLHGFAGSGR LPNSSLSSYS PVGMLGRLNS PAGMSLRGIT SSGLIQQNSQ NLNCAINNLG 360 KLQPTTMLSP NQTTNLLQGI PTSLEIGQLQ HSKSTTSIGD FNTMNDTSGF GVPNSFPETR 420 ANIGNSTYSV SPAPLMLQGT IPTYGNQTSL RVDPLNGETF DIDVGGSNFL DPDPSNGNWQ 480 GAAHLSRFSA TSLTTNEAYP SDQLHSMNSV ISSTPSTIGN ISVDFSSRSA GSASLLDSRD 540 VQCQTGVVGS VIQSMNTMPK QSWEEHKHDF GRNVQHNLGA INSLVASDGN PTPLNQSFNQ 600 NGVVRDRKVG SSLIVPSNVA SLSFPQHGVV EKLGPNTKTN VDGNYLLNQM KSHDGSIQGS 660 FESLDDIMNS IIKRDSAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-21 | 206 | 270 | 3 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681808 | 0.0 | LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011655885.1 | 0.0 | PREDICTED: two-component response regulator ARR12 isoform X2 | ||||
Swissprot | Q6K8X6 | 1e-132 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A0A0LWL4 | 0.0 | A0A0A0LWL4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146697.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004162449.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-125 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.350850.2 |
Entrez Gene | 101213687 |
Publications ? help Back to Top | |||
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