PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.349830.1
Common NameCsa_6G096440, LOC101221141
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 355aa    MW: 40640.8 Da    PI: 6.1287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.349830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.51.7e-3094199199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.s 88 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+  l ++  
  Cucsa.349830.1  94 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHraLPSHsV 188
                     89**************************99555567889***********************************************954223335 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  Cucsa.349830.1 189 NDRLFIDWRRR 199
                     55667777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-4289200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-3091182IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-2592181No hitNo description
SMARTSM010191.3E-2294200IPR003340B3 DNA binding domain
PfamPF023623.9E-2894199IPR003340B3 DNA binding domain
PROSITE profilePS5086314.2494200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEFLTKSTKE DQDQDQEEEE EEDEDQEQDQ DLVACNFFPN SHSTQLTKQQ DQDQDQESGN  60
YECQNEDHQP ILMDLSLRME SNGFADVVER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF  120
PLDSSTNDKG LILNFEDRHG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFH  180
RALPSHSVND RLFIDWRRRR SDAPTPHHHH HHFSNPFLLR WGTTARHLPP PPPPPRRTTH  240
HQHHLYPNYG FEIPNFGMSN INNTSMYYFR PPSSSSSLYR MGNGDEIVVN NQGCSSMGII  300
NKPGSGAAKR LRLFGVNMEC ASPDGEGGGG GEDVSNGGVP RRGKEPLSLN WDLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-61871991113B3 domain-containing transcription factor NGA1
5os9_B1e-61871991113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140634.20.0PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2683e-68NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A0A0KCC30.0A0A0A0KCC3_CUCSA; Uncharacterized protein
STRINGXP_004140634.10.0(Cucumis sativus)
STRINGXP_004164996.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-67B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]