PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.349620.1 | ||||||||
Common Name | Csa_6G094760, LOC101217032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | SBP | ||||||||
Protein Properties | Length: 306aa MW: 33741.9 Da PI: 8.7673 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.6 | 9.7e-40 | 50 | 126 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ Cucsa.349620.1 50 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 126 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-32 | 43 | 111 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.718 | 47 | 124 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-37 | 48 | 129 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-29 | 50 | 123 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MYWELRGIGN MDERSMDDMK GTRVALIESS SSRLMKRSRA PGSGAQVPSC MVDGCSSDLS 60 KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRFHSL VEFDDRKRSC RKRLDGHNRR 120 RRKPQPATMT LNAGRFLYGN QGPRFLPFGN QLLTASSDVS SSWIGMIKPE NNVPLCGGNS 180 QFDFTDRRKR LLPKSSDTQP FLNVGSSNGG NVQKVLGNGS NRFFDSDCAL SLLSTPVEPG 240 EINLSSMSQS NLIPPAHFIH SDGLGLEGDP ISSGLVSDGS SDANIRCYST FQDGPDGSSV 300 DLFRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-27 | 50 | 123 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 122 | RKRSCRKRLDGHNRRRRK |
2 | 105 | 123 | RKRSCRKRLDGHNRRRRKP |
3 | 106 | 123 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140535.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 3e-51 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A0A0KAG4 | 0.0 | A0A0A0KAG4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170782.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-47 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.349620.1 |
Entrez Gene | 101217032 |