PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.349200.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 146aa    MW: 15939.1 Da    PI: 10.7917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.349200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20958255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Cucsa.349200.1  9 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAIAYDNAALRFKG 58
                    7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-33867IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22967IPR016177DNA-binding domain
PfamPF008471.4E-13958IPR001471AP2/ERF domain
SMARTSM003803.5E-38972IPR001471AP2/ERF domain
PROSITE profilePS5103224.882966IPR001471AP2/ERF domain
CDDcd000185.37E-22967No hitNo description
PRINTSPR003677.2E-121021IPR001471AP2/ERF domain
PRINTSPR003677.2E-123248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
SDQSGRKRHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD TAEAAAIAYD NAALRFKGTK  60
AKLNFPERVQ ANPAEFGFLS PASIAAPPPP TAVSSPSVSL PPPLSHEEAF PGLHQYAQLL  120
SRSESKCYVV TLTRLASSRS FFKSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-27871468ATERF1
3gcc_A4e-27871468ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658395.12e-52PREDICTED: ethylene-responsive transcription factor ERF113
TrEMBLA0A0A0K9G51e-52A0A0A0K9G5_CUCSA; Uncharacterized protein
STRINGXP_004140654.13e-52(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-31related to AP2 6l