PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.345910.1
Common NameCsa_7G051450, LOC101220654
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SRS
Protein Properties Length: 318aa    MW: 35198.9 Da    PI: 7.4751
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.345910.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702210.35e-65952433154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                      g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqq ++  +++ +++++a++ ++ +l   k+   ++  l++ + +
  Cucsa.345910.1  95 GGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQRHQIFQNHRRQQSQANQSDQTTL---KRLGENQPLLATPTVT 186
                     5789***************************************************999988887766666666554...3333344444445555 PP

          DUF702  98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     + l+++++P+e +s+a frcv+vs++d+ ee+laYqt+v++gGh+fkGiLyd+G+e+
  Cucsa.345910.1 187 SGLQVAHFPAEFNSPANFRCVKVSAIDNVEEQLAYQTSVNVGGHMFKGILYDHGPES 243
                     679999*************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.2E-6297242IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-2699141IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-23193241IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRGLLYLGGK QEEDEEESLR SGREQQLFLY STNNNNNNEE IYSKGLEIWP QQNVENYISF  60
GVVGPTRKNL IINASDHEFV SRLGFSMMRG GSGGGGGMNC QDCGNQAKKD CSHLRCRTCC  120
KSRGFQCQTH VKSTWVPAAK RRERQQQRHQ IFQNHRRQQS QANQSDQTTL KRLGENQPLL  180
ATPTVTSGLQ VAHFPAEFNS PANFRCVKVS AIDNVEEQLA YQTSVNVGGH MFKGILYDHG  240
PESSQNMSID IGGESSYCHR GEDDSQLLDL VIGASNGSGR VSQSSSSAPF VESSLYPIPI  300
NNTYNNAGTQ FFPSTRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137039.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A0A0K1X20.0A0A0A0K1X2_CUCSA; Uncharacterized protein
STRINGXP_004137039.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.22e-62SHI-related sequence 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]