PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.342790.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 26411.7 Da PI: 11.1647 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.6 | 1.8e-29 | 41 | 91 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s Cucsa.342790.2 41 KRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 91 79***********************************************86 PP | |||||||
2 | K-box | 94.1 | 2.4e-31 | 103 | 200 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk+ g++l+ +++e++q +l+kLk+ ++nL+r++R+++Ge++++Ls++eL+ Leq+++++++ iR++K++++ +qie+ +kk k++ e++k+L Cucsa.342790.2 103 YQKTLGVDLWITHYERMQDNLKKLKDINRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLL 197 7899999***************************************************************************************9 PP K-box 96 kkl 98 +++ Cucsa.342790.2 198 QEF 200 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.085 | 33 | 93 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-41 | 33 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.88E-38 | 34 | 112 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 35 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-29 | 35 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-36 | 35 | 127 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 42 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-29 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-29 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.4E-22 | 114 | 200 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.144 | 116 | 212 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MYVYFSHKQQ HQQQQERRRS RRRRRRRRKR KNMARGKIQI KRIENPTNRQ VTYSKRRNGL 60 FKKANELTVL CDAKVSIIMF SSTGKLHEYI SPATSTKELF DQYQKTLGVD LWITHYERMQ 120 DNLKKLKDIN RNLRRQIRQR MGECMNDLSF EELRCLEQDM DNAVRIIRER KYRVISNQIE 180 THKKKLKSVG EIHKSLLQEF VSVIKFIGRY TLWCVTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-15 | 33 | 91 | 1 | 59 | MEF2C |
5f28_B | 1e-15 | 33 | 91 | 1 | 59 | MEF2C |
5f28_C | 1e-15 | 33 | 91 | 1 | 59 | MEF2C |
5f28_D | 1e-15 | 33 | 91 | 1 | 59 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 28 | RRRSRRRRRRRRK |
2 | 16 | 30 | RRRSRRRRRRRRKRK |
3 | 18 | 27 | RSRRRRRRRR |
4 | 20 | 27 | RRRRRRRR |
5 | 21 | 27 | RRRRRRR |
6 | 22 | 29 | RRRRRRKR |
7 | 22 | 30 | RRRRRRKRK |
8 | 24 | 30 | RRRRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY944060 | 0.0 | AY944060.1 Cucumis sativus MADS box protein (MADS1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466510.1 | 1e-125 | PREDICTED: floral homeotic protein DEFICIENS isoform X1 | ||||
Swissprot | E0CPH4 | 6e-92 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | A0A0A0LGG1 | 1e-127 | A0A0A0LGG1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004154859.1 | 1e-143 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 6e-69 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.342790.2 |
Publications ? help Back to Top | |||
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