PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.342790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 277aa MW: 32611.3 Da PI: 10.5964 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.1 | 2.7e-29 | 41 | 91 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s Cucsa.342790.1 41 KRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 91 79***********************************************86 PP | |||||||
2 | K-box | 93.8 | 2.9e-31 | 103 | 201 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk+ g++l+ +++e++q +l+kLk+ ++nL+r++R+++Ge++++Ls++eL+ Leq+++++++ iR++K++++ +qie+ +kk k++ e++k+L Cucsa.342790.1 103 YQKTLGVDLWITHYERMQDNLKKLKDINRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLL 197 7899999***************************************************************************************9 PP K-box 96 kkle 99 ++++ Cucsa.342790.1 198 QEFD 201 9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.085 | 33 | 93 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-41 | 33 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.83E-39 | 34 | 112 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 35 | 89 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-36 | 35 | 127 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 35 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-25 | 42 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-21 | 114 | 200 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.741 | 116 | 206 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MYVYFSHKQQ HQQQQERRRS RRRRRRRRKR KNMARGKIQI KRIENPTNRQ VTYSKRRNGL 60 FKKANELTVL CDAKVSIIMF SSTGKLHEYI SPATSTKELF DQYQKTLGVD LWITHYERMQ 120 DNLKKLKDIN RNLRRQIRQR MGECMNDLSF EELRCLEQDM DNAVRIIRER KYRVISNQIE 180 THKKKLKSVG EIHKSLLQEF DIATEEDPHY GLVDNGGVGV GIGGGDYESI MGFSGAAHPR 240 IFALRLQPNH THNNHLNNIH LHHPPPSDLT TYPLLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-15 | 33 | 92 | 1 | 60 | MEF2C |
5f28_B | 1e-15 | 33 | 92 | 1 | 60 | MEF2C |
5f28_C | 1e-15 | 33 | 92 | 1 | 60 | MEF2C |
5f28_D | 1e-15 | 33 | 92 | 1 | 60 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 28 | RRRSRRRRRRRRK |
2 | 16 | 30 | RRRSRRRRRRRRKRK |
3 | 18 | 27 | RSRRRRRRRR |
4 | 20 | 27 | RRRRRRRR |
5 | 21 | 27 | RRRRRRR |
6 | 22 | 29 | RRRRRRKR |
7 | 22 | 30 | RRRRRRKRK |
8 | 24 | 30 | RRRRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY944060 | 0.0 | AY944060.1 Cucumis sativus MADS box protein (MADS1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295864.1 | 0.0 | floral homeotic protein DEFICIENS | ||||
Swissprot | E0CPH4 | 1e-111 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | Q58IJ2 | 0.0 | Q58IJ2_CUCSA; MADS box protein | ||||
STRING | XP_004154859.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 5e-74 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.342790.1 |
Publications ? help Back to Top | |||
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