PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.342770.1

Common Name

Csa_3G865400, LOC101218246

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

SRS

Protein Properties

Length: 303aa MW: 33808.2 Da PI: 7.5616

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.342770.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	187.2	6.1e-58	105	239	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqq +++ss+ + +k +re+ +l+ t++ Cucsa.342770.1 105 GGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQSSD------QTVPKIHREN----PPSLTVTTT------ 183 5789********************************************9998875433......3445555553....344444432...... PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + le ++ e +s+avfrcv+vs++d+ ee+laYqtav+igGh+fkGiLydqG+e Cucsa.342770.1 184 SGLEHGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPE 239 346778899*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.8E-58	107	239	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.0E-27	109	151	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.7E-24	191	238	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MTELFYLDRK QEDDPENQRA RSEQQLFLYN SRSNNPQQIC SKEFQIWPQY YSHHNQHPPH 60 QNVENYISFG VGPSRRSSLM INAFDHDFVS RSGFTMTKHS GGGSGGGMNC QDCGNQAKKD 120 CSHLRCRTCC KSRGFHCQTH VKSTWVPAAK RRERQQQRHQ QSSDQTVPKI HRENPPSLTV 180 TTTSGLEHGN FQGEFNSSAV FRCVKVSAID NVEEQLAYQT AVNIGGHMFK GILYDQGPEY 240 SQNLSTGGDG EDGGEGLDLV IGASNGSGRV NNQSTPFVES SLYPIPINSF NNGMQFFPSS 300 RT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147842.2	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	5e-65	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A0A0LDI9	0.0	A0A0A0LDI9_CUCSA; Uncharacterized protein
STRING	XP_004154911.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	4e-57	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Cucsa.342770.1
Entrez Gene	101218246

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]