PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.342610.1 | ||||||||
Common Name | Csa_3G860240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23461.2 Da PI: 9.7286 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.5 | 8.3e-24 | 22 | 69 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + e ks +qvtfskRr+g++KKA ELSvLC+aeva+i+fs+++kl+ + Cucsa.342610.1 22 KLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFCF 69 67899****************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-33 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.235 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-28 | 14 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-22 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 15 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-24 | 23 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-22 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-22 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEKLNAIPMK KTLGRQKIEI KKLEKKSSKQ VTFSKRRAGL FKKAGELSVL CGAEVAIIVF 60 SPNDKLFCFG HPDVDVLLDR YLTGNLSPPK PAESYIPVAE FNRDFADFAL EFEAEKKRAA 120 ELIRAAEDSR KNGGFWWQEA VEGLRLEELK DFRSALMDLR AKVAERVEKL TAPMTSSPFH 180 LIGNHQELPP PTAFHLAGNQ RVATGLGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 13 | 94 | 1 | 78 | MEF2C |
5f28_B | 1e-17 | 13 | 94 | 1 | 78 | MEF2C |
5f28_C | 1e-17 | 13 | 94 | 1 | 78 | MEF2C |
5f28_D | 1e-17 | 13 | 94 | 1 | 78 | MEF2C |
6byy_A | 1e-17 | 13 | 100 | 1 | 86 | MEF2 CHIMERA |
6byy_B | 1e-17 | 13 | 100 | 1 | 86 | MEF2 CHIMERA |
6byy_C | 1e-17 | 13 | 100 | 1 | 86 | MEF2 CHIMERA |
6byy_D | 1e-17 | 13 | 100 | 1 | 86 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 0.0 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147877.2 | 1e-130 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0A0LE01 | 1e-134 | A0A0A0LE01_CUCSA; Uncharacterized protein | ||||
STRING | XP_004164009.1 | 1e-138 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-34 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.342610.1 |
Publications ? help Back to Top | |||
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