PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.342360.1
Common NameCsa_3G857030, LOC101203667
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 95aa    MW: 10918.2 Da    PI: 9.8467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.342360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+   + + +a + + ++   +W   ar +g g+t++++k ++  
   Cucsa.342360.1  6 NWTAKQNKVFENALAIYDKDtpeRWQNLARAVG-GKTAEEVKRHYER 51
                     8********************************.**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.223257IPR017884SANT domain
SMARTSM007173.8E-7355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-5559IPR009057Homeodomain-like
CDDcd001672.37E-6653No hitNo description
PfamPF002491.9E-5651IPR001005SANT/Myb domain
SuperFamilySSF466895.91E-13660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MGSGSNWTAK QNKVFENALA IYDKDTPERW QNLARAVGGK TAEEVKRHYE RLVEDVNKIE  60
TGQVPFPNYR RSVPAARGFY FLDQEQRMRS LQLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-33293692RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6830911e-120LN683091.1 Cucumis melo genomic scaffold, unanchored_scaffold01279.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147867.11e-65PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB86e-36RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0A0LGK82e-64A0A0A0LGK8_CUCSA; Uncharacterized protein
STRINGXP_004154839.14e-65(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-38RAD-like 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]