PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.341840.1
Common NameCsa_3G852510
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 576aa    MW: 64868.1 Da    PI: 9.4119
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.341840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.8e-1823108899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s++l+s rl lp kf+++ +++   ++ ++l  +sg++W v+l   +  +  ++ +GW  F++++ L+ gDf+vF++d+  e +++v+vf++
  Cucsa.341840.1  23 SSTLSSERLKLPLKFVKHLEEI--IGRSVVLIGPSGQTWHVNL--IQENDNLFFCDGWPTFARDHALECGDFLVFRYDS--ELNFNVQVFDQ 108
                     789999**********666766..6678***************..66666788999********************976..5666****997 PP
2B348.81.2e-15221313398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++ +v  s  l +p kf  +h   + ++ +l+l +++g+sW+v+    ++   +++l +GW  Fv+ n+++ gD++vF+l+++ e   +v++
  Cucsa.341840.1 221 RIMKSFNVRGSYTLNIPYKFSMAHL--PSCKLKLVLHNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRGNDINMGDICVFELVRDCEL--CVHI 311
                     55666667777889******98995..458889**************954566666799************************986655..9**9 PP

                     E- CS
              B3  97 fr 98 
                     fr
  Cucsa.341840.1 312 FR 313
                     98 PP
3B350.15e-16455543596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +++ +++ s  l +p +f ++h  +    ++++l+ ++g  W+v+    + ++ ++++ +GW +Fv++ng++ gD+++F+l+g+ e   +v+v
  Cucsa.341840.1 455 MKKFNTSGSYTLKIPHQFSSAHFPN--IRTEIVLRGPNGGCWTVNSVPdSMGRMMHTFCGGWMSFVRDNGIQMGDICIFELVGKCEL--YVHV 543
                     5455556667799*********744..6679***************6545555559999**********************996555..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-2213111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2315111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.10116109IPR003340B3 DNA binding domain
SMARTSM010193.7E-1318109IPR003340B3 DNA binding domain
PfamPF023624.2E-1523108IPR003340B3 DNA binding domain
CDDcd100172.34E-1923107No hitNo description
Gene3DG3DSA:2.40.330.102.3E-22211313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-23212314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-19217313No hitNo description
PfamPF023621.6E-12219313IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225219315IPR003340B3 DNA binding domain
SMARTSM010192.2E-12219315IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-23446544IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-24447545IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-21449543No hitNo description
PfamPF023621.6E-13451543IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296451547IPR003340B3 DNA binding domain
SMARTSM010191.3E-15451549IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSETESRREM VAARRPSFYT FYSSTLSSER LKLPLKFVKH LEEIIGRSVV LIGPSGQTWH  60
VNLIQENDNL FFCDGWPTFA RDHALECGDF LVFRYDSELN FNVQVFDQSA CEKEGAFLSQ  120
FRQDNTGHKR DREEDHSSQE TREQDVTKKT RSISDVNLDC IRENLPSIRT VEDHKSVAGQ  180
NGISKVDDIT TRDKIPALPL SFQDEKKVSQ TFSSNFPYFV RIMKSFNVRG SYTLNIPYKF  240
SMAHLPSCKL KLVLHNLKGE SWTVNSVPTT RVHTSHTLCG GWMAFVRGND INMGDICVFE  300
LVRDCELCVH IFRVGKEMSE DQSGNGSFNR LGTGHAVIPR KALKGLPKKM NGNSHKVHSK  360
RSKRIEIPDK KCLKSWQESF CNDTKKHSSA KKVSTKVMVC SPSKKPSKRL VNQRTSVKGD  420
LILPARPGLR AMLARDEERA AKSFVSCFPS FVRIMKKFNT SGSYTLKIPH QFSSAHFPNI  480
RTEIVLRGPN GGCWTVNSVP DSMGRMMHTF CGGWMSFVRD NGIQMGDICI FELVGKCELY  540
VHVTGVGKKG FELSSEATTC SELASVPTTS NHPSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652881.10.0PREDICTED: B3 domain-containing protein Os11g0197600
TrEMBLA0A0A0LGE70.0A0A0A0LGE7_CUCSA; Uncharacterized protein
STRINGXP_004147830.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-19B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]