PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.341790.1
Common NameCsa_3G852460, LOC101209303
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 319aa    MW: 35591.1 Da    PI: 9.1194
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.341790.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52171451128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGf FhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++
  Cucsa.341790.1  17 LPPGFGFHPTDEELVVHYLKKKATSLPLPV-AIIAEVDLYKYDPWELPAKASYGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIAS 110
                     79****************************.88***************9888999*************************************998 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Cucsa.341790.1 111 seGNRKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 145
                     778889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6313183IPR003441NAC domain
PROSITE profilePS5100560.86317183IPR003441NAC domain
PfamPF023656.8E-2718145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MENLKSAQET DSERPNLPPG FGFHPTDEEL VVHYLKKKAT SLPLPVAIIA EVDLYKYDPW  60
ELPAKASYGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVIAS SEGNRKVGVK  120
KALVFYGGKP PKGIKTNWIM HEYRLADNKS GGGNNNKPPG FNIGGKKNSL RLDDWVLCRI  180
YKKTNSNKPG MDHEREDCFD SLVGSIPSSI QINSYNQSMT TTTTATNFSM YSELASLSLP  240
MKRLLQPPSW EEEEYRLADN RSSRKRLQLM NGGGGGDNSI AALLSQLPSL QQPTLQGCIV  300
GDEIFRPAFQ LPETNWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-7081867168NO APICAL MERISTEM PROTEIN
1ut4_B1e-7081867168NO APICAL MERISTEM PROTEIN
1ut7_A1e-7081867168NO APICAL MERISTEM PROTEIN
1ut7_B1e-7081867168NO APICAL MERISTEM PROTEIN
3swm_A1e-70818610171NAC domain-containing protein 19
3swm_B1e-70818610171NAC domain-containing protein 19
3swm_C1e-70818610171NAC domain-containing protein 19
3swm_D1e-70818610171NAC domain-containing protein 19
3swp_A1e-70818610171NAC domain-containing protein 19
3swp_B1e-70818610171NAC domain-containing protein 19
3swp_C1e-70818610171NAC domain-containing protein 19
3swp_D1e-70818610171NAC domain-containing protein 19
3ulx_A1e-7081865171Stress-induced transcription factor NAC1
4dul_A1e-7081867168NAC domain-containing protein 19
4dul_B1e-7081867168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2135570.0EF213557.1 Cucumis melo NAC transcription factor (JA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147807.10.0PREDICTED: NAC domain-containing protein 18-like
SwissprotQ9LD441e-103NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A0A0LGE30.0A0A0A0LGE3_CUCSA; Uncharacterized protein
STRINGXP_004147807.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2488033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-92NAC domain containing protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]