PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.340790.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 22672.4 Da PI: 8.4718 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65 | 1.4e-20 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G ++Wk+Ia++ g++R++k+c++rw++yl Cucsa.340790.2 34 KGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAGLNRCGKSCRLRWLNYL 81 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 87 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Cucsa.340790.2 87 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 132 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.921 | 29 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.35E-30 | 32 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-17 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-19 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.27E-11 | 36 | 81 | No hit | No description |
SMART | SM00717 | 1.9E-15 | 86 | 134 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.433 | 86 | 136 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.6E-14 | 87 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 89 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.27E-9 | 91 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MTEEEEESLK RKVKQVVEGD INEAEILRNG GVNKGAWTAE EDQKLAQVIA IHGAKRWKSI 60 AAKAGLNRCG KSCRLRWLNY LRPNIKRGNI SDQEEDLILR LHKLLGNRWS LIAGRLPGRT 120 DNEIKNYWNS HLSKKMNQQS EKERRKGCKR KVNTESREEE TSQERENSSN LEYDVDNLFD 180 FSNEGPDLEW MSNFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 29 | 136 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681828 | 1e-142 | LN681828.1 Cucumis melo genomic scaffold, anchoredscaffold00083. | |||
GenBank | LN713258 | 1e-142 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151013.2 | 1e-140 | PREDICTED: transcription factor MYB114-like isoform X2 | ||||
Refseq | XP_008464000.1 | 1e-140 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | O49608 | 1e-53 | MYB32_ARATH; Transcription factor MYB32 | ||||
TrEMBL | A0A1S3CKJ6 | 1e-139 | A0A1S3CKJ6_CUCME; transcription factor MYB114-like | ||||
STRING | XP_008464000.1 | 1e-140 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 3e-53 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.340790.2 |