PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.340790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25833 Da PI: 8.4794 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.8 | 8.8e-12 | 34 | 65 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd++l+++++ +G ++Wk+Ia++ g Cucsa.340790.1 34 KGAWTAEEDQKLAQVIAIHGAKRWKSIAAKAG 65 79***************************998 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 115 | 160 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Cucsa.340790.1 115 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 160 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.375 | 29 | 109 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.32E-8 | 30 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-13 | 33 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-10 | 34 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 35 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.99E-8 | 36 | 109 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-21 | 95 | 168 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.186 | 110 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 114 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 115 | 160 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 117 | 165 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.92E-10 | 119 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MTEEEEESLK RKVKQVVEGD INEAEILRNG GVNKGAWTAE EDQKLAQVIA IHGAKRWKSI 60 AAKAGPSLST FNFSFFFPTS HAHIFNGFLN FPGLNRCGKS CRLRWLNYLR PNIKRGNISD 120 QEEDLILRLH KLLGNRWSLI AGRLPGRTDN EIKNYWNSHL SKKMNQQSEK ERRKGCKRKV 180 NTESREEETS QERENSSNLE YDVDNLFDFS NEGPDLEWMS NFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-25 | 29 | 164 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681828 | 0.0 | LN681828.1 Cucumis melo genomic scaffold, anchoredscaffold00083. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652333.1 | 1e-165 | PREDICTED: transcription factor WER-like isoform X1 | ||||
TrEMBL | A0A1S3CKJ6 | 1e-133 | A0A1S3CKJ6_CUCME; transcription factor MYB114-like | ||||
STRING | XP_004173530.1 | 1e-164 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 8e-47 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.340790.1 |