PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.339580.2 | ||||||||
Common Name | Csa_3G835890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 23735.5 Da PI: 4.442 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.4e-18 | 4 | 48 | 12 | 56 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ Le+ Fe+++++ e++ +LAkklgL+ rqV vWFqNrRa++k Cucsa.339580.2 4 VQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 48 689*****************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.2 | 9.6e-38 | 4 | 86 | 11 | 93 |
HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 v++LE++Feee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd l+++ +++ ke++ L++e+++ Cucsa.339580.2 4 VQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLVSNYDSIVKENAVLKSEVAS 86 89****************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.9E-8 | 1 | 54 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.455 | 1 | 50 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 3 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.70E-15 | 4 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 4 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-15 | 4 | 48 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.9E-6 | 21 | 30 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 25 | 48 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-6 | 30 | 46 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.7E-17 | 50 | 90 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MLKVQMLEKN FEEENKLEPE RKSQLAKKLG LQPRQVAVWF QNRRARWKTK QLERDYDVLK 60 ASYDLLVSNY DSIVKENAVL KSEVASLTEK CLAKELGGGE ATIPSITSTS ELLLADITNI 120 SVPHSGRKAE DRLSSGSDSS AVIDDNCPQL IDSGDSYFPN IEYPQCSNLP NGLQMEDDDT 180 NDNCNYLFSD MFAATNQQNQ EGRPPALWAW P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 50 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-151 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-151 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141083.1 | 1e-152 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 1e-63 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A0A0LG54 | 1e-154 | A0A0A0LG54_CUCSA; Uncharacterized protein | ||||
STRING | XP_004167237.1 | 1e-151 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-55 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.339580.2 |
Publications ? help Back to Top | |||
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