PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.338950.1

Common Name

Csa_3G826680, LOC101204974

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ZF-HD

Protein Properties

Length: 293aa MW: 31446.9 Da PI: 8.4049

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.338950.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	112.2	2.6e-35	60	116	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++ Cucsa.338950.1 60 QVVYKECLKNHAASLGGHALDGCGEFMPSPTATaTDPTSLKCAACGCHRNFHRREPD 116 799**************************99999****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-19	61	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.1E-29	61	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.418	63	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.3E-32	63	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.19E-19	194	261	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-30	196	262	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.2E-26	200	257	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDLTPAISTA AATISTGGGA VKSPELESET PIKIQPTTKS HPFTNGVLKR HHHTAPPPPQ 60 VVYKECLKNH AASLGGHALD GCGEFMPSPT ATATDPTSLK CAACGCHRNF HRREPDDPIA 120 TPTTTHVIEY QPHHRHHPPP PSTAAAAHRS PSSASPPPIS SSYYPSAPHM LLALSGVLPE 180 NAGGGGGFHH TILTPSPNSR KRFRTKFTQN QKERMYEFAE KVGWKIQKRD EDMIQEFCSD 240 VGVDRGVLKV WMHNNKNTLG KKDGGRNMNG SGGEGDGDEK INGGGEPHAT TNX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-22	199	258	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147471.1	0.0	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	5e-80	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A0A0LFA1	0.0	A0A0A0LFA1_CUCSA; Uncharacterized protein
STRING	XP_004163533.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	4e-74	homeobox protein 34

Link Out ? help Back to Top
Phytozome	Cucsa.338950.1
Entrez Gene	101204974

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]