PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.338130.1 | ||||||||
Common Name | Csa_3G822390, LOC101215818 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20039.4 Da PI: 9.3365 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.4 | 6.7e-40 | 30 | 131 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f+++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+ael Cucsa.338130.1 30 PCGACKFLRRKCVNGCIFAPHFASDQgAARFAAVHKIFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAEL 124 7*************************89******************************************************************* PP DUF260 95 allkeel 101 a+++++l Cucsa.338130.1 125 AAVQAQL 131 ***9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.084 | 29 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-38 | 30 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MADADQLPRR KPLGNKRANR DPDSATVTAP CGACKFLRRK CVNGCIFAPH FASDQGAARF 60 AAVHKIFGAS NVSKLLLHIP VSRRNDAVVT ISYEAQARLS DPVYGCVSTV LALQQQVASL 120 QAELAAVQAQ LISSRLAFAA AVQNSQSSQV GVLQPAYSNN SSISASTSAP NAINLSSFAS 180 NYDLPTETAX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-39 | 22 | 132 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-39 | 22 | 132 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-159 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-159 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136784.1 | 1e-134 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 1e-69 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0A0LCJ9 | 1e-132 | A0A0A0LCJ9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136784.1 | 1e-133 | (Cucumis sativus) | ||||
STRING | XP_004159662.1 | 1e-133 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-53 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.338130.1 |
Entrez Gene | 101215818 |
Publications ? help Back to Top | |||
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