PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.338050.1
Common NameCsa_3G822310, LOC101215098
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 504aa    MW: 54269.3 Da    PI: 6.236
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.338050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.41.6e-38112171261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+++cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grr+nk+ 
  Cucsa.338050.1 112 PDKIIPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRRNKQL 171
                     7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-30109169IPR003851Zinc finger, Dof-type
PfamPF027014.4E-31114170IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.463116170IPR003851Zinc finger, Dof-type
PROSITE patternPS013610118154IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSSSTTQDVI SPPHFKDLAI KLFGRTIPLP ESQISAAPLH NPDACNNLKK AEQSVSGAED  60
SCPSERSSVL VGDNEENQAS NVTSNKGESE LHLKEEQEDG NGTDQERAFK KPDKIIPCPR  120
CNSLETKFCY FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRRNKQ LASQYRQIIV  180
SSEGVATTRL ETSDATNHHH LLSNIESPSA LRPSNGSSTV LKFGPEAPLC ESMETVLSLG  240
DQKRSIEIGS AYCGDSPEEP SSCGSSMTTT SIRGNELPKS VIERPEAVRL SNSSSDITAS  300
NTVHCYPVPQ LVFPLNQGGS SLISSAMTQS SDSTSVPNTS SHPNPPVQWL PATVLAVPGF  360
CTPSLPLQFV PASCWGCTPV WTSTGTGNLT VVPSDVCASQ TSTCPTSSSP TLGKHLRDTN  420
SLAEDEKSEK CVVVPKTLRV DNPSEASRSP IWTTFGIHPY PKENISKGSV FETSETTNAD  480
SKGHFRDTPQ ILEAKTGSFY SLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136781.10.0PREDICTED: cyclic dof factor 3-like
TrEMBLA0A0A0LBU40.0A0A0A0LBU4_CUCSA; Uncharacterized protein
STRINGXP_004136781.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-47cycling DOF factor 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]