PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.337000.1
Common NameCsa_3G812750, LOC101208377
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 268aa    MW: 30475.8 Da    PI: 10.0293
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.337000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-175095147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+ +G+ +W++Ia+ ++ gR++k+c++rw++ 
   Cucsa.337000.1 50 RGHWRPAEDTKLKELVAHYGPQNWNLIAENLP-GRSGKSCRLRWFNQ 95
                     899*****************************.***********996 PP
2Myb_DNA-binding54.13.5e-17102145146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++ +eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
   Cucsa.337000.1 102 RKAFNEEEEERLLTAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 145
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1554596IPR017930Myb domain
SMARTSM007179.1E-154998IPR001005SANT/Myb domain
PfamPF002497.5E-175095IPR001005SANT/Myb domain
SuperFamilySSF466892.52E-2850143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2651103IPR009057Homeodomain-like
CDDcd001672.58E-125394No hitNo description
PROSITE profilePS5129425.42297151IPR017930Myb domain
SMARTSM007171.1E-14101149IPR001005SANT/Myb domain
PfamPF002496.0E-14102144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-20104150IPR009057Homeodomain-like
CDDcd001673.59E-10104144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
IGKGDDHQSH SKEEERDDDN DNDGNVVVTY RNDDGPKNNG ARRHTKLCAR GHWRPAEDTK  60
LKELVAHYGP QNWNLIAENL PGRSGKSCRL RWFNQLDPKI NRKAFNEEEE ERLLTAHRLY  120
GNKWAMIARL FPGRTDNAVK NHWHVIMARK HRQHSNLYRR STRKPLPLPP PPPPLPHDPS  180
GLNVNENLDV KALTKNNVSR WCSKTGSETG KLRYRTDKSG NSESNSAESV ISTNLSLGSS  240
WENNSNGQHH HHHMKMQFID FLGVGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32481505107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-158LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-158LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652133.11e-162PREDICTED: transcription factor MYB44
TrEMBLA0A0A0LEK91e-160A0A0A0LEK9_CUCSA; Uncharacterized protein
STRINGXP_008443134.11e-146(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-69myb domain protein 105
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]