PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.336980.1 | ||||||||
Common Name | Csa_3G812740, LOC101207317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WOX | ||||||||
Protein Properties | Length: 252aa MW: 26793.6 Da PI: 6.149 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.9 | 1.1e-15 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ Cucsa.336980.1 22 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 82 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.5 | 8.3e-35 | 21 | 84 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Cucsa.336980.1 21 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 84 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-14 | 18 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.353 | 18 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-6 | 20 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-13 | 22 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-8 | 22 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MENHGDDPNS PNQGCERAEP VRSRWTPKPE QILILESIFN SGMVNPPKDE TVRIRKLLEK 60 FGSVGDANVF YWFQNRRSRS RRRQRQLQAA ATHQGSTGAI HYDCGNVSSG GYNGGSGGIM 120 NFAGVSSSYL GGGSSSSSSS ASGVGGDCSG GSGGSSGFSM SGHMGFSEVD QQMVVTSTPS 180 FCPSETSNLE FQSGYIIIFI NGVPTEVPKG AVDMKAMFGE ETVLVHSSGL PVLTNEFGIS 240 LHTLQHGESY FL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136750.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 11 isoform X1 | ||||
Swissprot | Q6X7J3 | 1e-70 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A0A0LC01 | 0.0 | A0A0A0LC01_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136750.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 3e-36 | WUSCHEL related homeobox 11 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.336980.1 |
Entrez Gene | 101207317 |