PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.336220.5
Common NameCsa_6G166210, LOC101221933
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 376aa    MW: 41028 Da    PI: 8.3167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.336220.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-091171026
                    GGTS--TTTTT-SS-SS CS
         zf-CCCH 10 artGtCkyGdrCkFaHg 26
                    +rtG C+yG++C+F+H+
  Cucsa.336220.5  1 MRTGSCSYGSNCRFNHP 17
                    8***************9 PP
2zf-CCCH36.39.1e-123660327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +f++tGtCkyG++Ck++H++
  Cucsa.336220.5 36 QPDCEYFLKTGTCKYGGSCKYHHPR 60
                    789********************96 PP
3zf-CCCH37.54.1e-1283105527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G +CkF+H++
  Cucsa.336220.5  83 SCPYYLRTGSCKFGVSCKFNHPQ 105
                     6********************97 PP
4zf-CCCH406.3e-13219244227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ +GtCkyG+ CkF+H++
  Cucsa.336220.5 219 DQPECRYFMNNGTCKYGSDCKFHHPK 244
                     689*********************96 PP
5zf-CCCH34.92.5e-11261286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+++  +G CkyG++CkF H+
  Cucsa.336220.5 261 PGQAICSYYNMYGLCKYGPSCKFDHP 286
                     5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006428.3E-7117IPR000571Zinc finger, CCCH-type
SMARTSM0035630118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793119IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-63360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9153361IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-93660IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-63862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-43960IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-677106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.48378106IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-480105IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-1082105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-583104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558217245IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6217244IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10219244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-7221245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5223243IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112260288IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8262286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6263288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5265285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRTGSCSYGS NCRFNHPVYV GQGALYNGEL PERIGQPDCE YFLKTGTCKY GGSCKYHHPR  60
DRRGAGPVTF NILGLPMRQE EKSCPYYLRT GSCKFGVSCK FNHPQPSPVG NMLPQARPGA  120
LGSGGTPFMP SSGVPYPAWS MPRVQYMPGP CVQGQQSYVP VLVSPSQGAI AAQDWNTYVS  180
NVNPILPNLG YNNINLEDSY SNGQLALSTS TPTLPDRPDQ PECRYFMNNG TCKYGSDCKF  240
HHPKQRIAQS ATNALGLPSR PGQAICSYYN MYGLCKYGPS CKFDHPSPTY PYNYGFTLPL  300
LDSSIIKYPS NNFTMSSHET LPGTVSKSSE WVQKADPSNN KRRTTDSKVI IDSTGEEATS  360
VSCSLPGGSE SLQDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819211e-156LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132651e-156LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143196.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A0A0KF530.0A0A0A0KF53_CUCSA; Uncharacterized protein
STRINGXP_004143196.10.0(Cucumis sativus)
STRINGXP_004164619.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-95C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]