PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.336220.4
Common NameCsa_6G166210, LOC101221933
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 406aa    MW: 44457.7 Da    PI: 7.3022
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.336220.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.35.2e-134772126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C+yG++C+F+H+
  Cucsa.336220.4 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72
                    5789*********************9 PP
2zf-CCCH36.21e-1191115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++Ck++H++
  Cucsa.336220.4  91 QPDCEYFLKTGTCKYGGSCKYHHPR 115
                     789********************96 PP
3zf-CCCH37.34.5e-12138160527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G +CkF+H++
  Cucsa.336220.4 138 SCPYYLRTGSCKFGVSCKFNHPQ 160
                     6********************97 PP
4zf-CCCH39.97e-13249274227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ +GtCkyG+ CkF+H++
  Cucsa.336220.4 249 DQPECRYFMNNGTCKYGSDCKFHHPK 274
                     689*********************96 PP
5zf-CCCH34.82.8e-11291316126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+++  +G CkyG++CkF H+
  Cucsa.336220.4 291 PGQAICSYYNMYGLCKYGPSCKFDHP 316
                     5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3054674IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-64673IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-104872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-65173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-55271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.91588116IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-688115IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-494115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483133161IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4135160IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5138159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558247275IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6247274IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10249274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-7251275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5253273IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6290317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112290318IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8292316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5293318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4295315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MPDNLQVQRN DVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPVYVGQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVTFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLPQ ARPGALGSGG  180
TPFMPSSGVP YPAWSMPRVQ YMPGPCVQGQ QSYVPVLVSP SQGAIAAQDW NTYVLALSTS  240
TPTLPDRPDQ PECRYFMNNG TCKYGSDCKF HHPKQRIAQS ATNALGLPSR PGQAICSYYN  300
MYGLCKYGPS CKFDHPSPTY PYNYGFTLPL LDSSIIKYPS NNFTMSSHET LPGTVSKSSE  360
WVQKADPSNN KRRTTDSKVI IDSTGEEATS VSCSLPGGSE SLQDQ*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819211e-156LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132651e-156LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143196.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD91e-102C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0A0KF530.0A0A0A0KF53_CUCSA; Uncharacterized protein
STRINGXP_004143196.10.0(Cucumis sativus)
STRINGXP_004164619.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-105C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]