PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.336220.1 | ||||||||
Common Name | Csa_6G166210, LOC101221933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 431aa MW: 47189.6 Da PI: 6.8734 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.2 | 5.6e-13 | 47 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG++C+F+H+ Cucsa.336220.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72 5789*********************9 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ Cucsa.336220.1 91 QPDCEYFLKTGTCKYGGSCKYHHPR 115 789********************96 PP | |||||||
3 | zf-CCCH | 37.2 | 4.8e-12 | 138 | 160 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G +CkF+H++ Cucsa.336220.1 138 SCPYYLRTGSCKFGVSCKFNHPQ 160 6********************97 PP | |||||||
4 | zf-CCCH | 39.8 | 7.5e-13 | 274 | 299 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ CkF+H++ Cucsa.336220.1 274 DQPECRYFMNNGTCKYGSDCKFHHPK 299 689*********************96 PP | |||||||
5 | zf-CCCH | 34.7 | 3e-11 | 316 | 341 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++ +G CkyG++CkF H+ Cucsa.336220.1 316 PGQAICSYYNMYGLCKYGPSCKFDHP 341 5789*********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.305 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 51 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 52 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 94 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 132 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-10 | 137 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 138 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.558 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-10 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-7 | 276 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 278 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 315 | 343 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 315 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-8 | 317 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.11E-5 | 318 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 320 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MPDNLQVQRN DVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS 60 CSYGSNCRFN HPVYVGQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA 120 GPVTFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLPQ ARPGALGSGG 180 TPFMPSSGVP YPAWSMPRVQ YMPGPCVQGQ QSYVPVLVSP SQGAIAAQDW NTYVSNVNPI 240 LPNLGYNNIN LEDSYSNGQL ALSTSTPTLP DRPDQPECRY FMNNGTCKYG SDCKFHHPKQ 300 RIAQSATNAL GLPSRPGQAI CSYYNMYGLC KYGPSCKFDH PSPTYPYNYG FTLPLLDSSI 360 IKYPSNNFTM SSHETLPGTV SKSSEWVQKA DPSNNKRRTT DSKVIIDSTG EEATSVSCSL 420 PGGSESLQDQ * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681921 | 1e-156 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. | |||
GenBank | LN713265 | 1e-156 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143196.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A0A0KF53 | 0.0 | A0A0A0KF53_CUCSA; Uncharacterized protein | ||||
STRING | XP_004143196.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004164619.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-108 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.336220.1 |
Entrez Gene | 101221933 |
Publications ? help Back to Top | |||
---|---|---|---|
|