PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.332360.1

Common Name

Csa_1G696440, LOC101222405

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CPP

Protein Properties

Length: 603aa MW: 65098.1 Da PI: 7.7081

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.332360.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.3	7.1e-14	126	165	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k CnCk+s+Clk+YCeCfa+g++C+ C+C++C+N+ e+ Cucsa.332360.1 126 QCKLCNCKHSRCLKLYCECFASGVYCDG-CNCTNCHNNVEH 165 7999**********************.******9876 PP
2	TCR	50.9	3.1e-16	210	249	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Cucsa.332360.1 210 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 249 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.1E-15	125	165	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.747	126	250	IPR005172	CRC domain
Pfam	PF03638	3.1E-10	128	162	IPR005172	CRC domain
SMART	SM01114	8.4E-20	210	251	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-12	213	248	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MGEVGNQEMD NLSSVIPQTD SVELGNVVSS DVPAKKLARQ LDFTGTGGAV LPEHPHFQSR 60 SRCQESESPA VMVVQSQSQP QSPQQLVVLP IGTKAPLPPA RKPDSPKSRS RSNVETKDAT 120 PKKQKQCKLC NCKHSRCLKL YCECFASGVY CDGCNCTNCH NNVEHEASRR EAVETTLERN 180 PNAFRPKIAN SPHGTRESRD EIGELVMLGK HNKGCHCKKS GCLKKYCECF QANILCSENC 240 KCMDCKNFEG SEERQALFHG DHANNIAYIQ QAANAAITGA IGSSGYACLP VSKKRKGPEL 300 GFGPVGKDSP LNSIPQLHQA NNIMSSGMST SSPFPAAHVG SPVASGPSKF SFRSLLADLI 360 QPNDLKELCS VLVVLTSEVA KIQAEQRSDE KQINDPQQTS RASSSGDGVQ HQKAEEKAAD 420 GECGSSNQSD RSVHDSSNSN SSDMTRARPM SPGTLALMCD EQDTMFMGAG LADGSAAHDC 480 NTSSHVPDRS LSEVYIEQER IVLTKFRDCL NKLITLGEIK ETKLTSRSES EVGNQNQSNN 540 FTSNSGCQQR SISNGVVKNV ALSAPRIPPA CTAAHHPNND LPLKILPVPK NRKSKPQIDR 600 EV*

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MGEVGNQEMD NLSSVIPQTD SVELGNVVSS DVPAKKLARQ LDFTGTGGAV LPEHPHFQSR  60
SRCQESESPA VMVVQSQSQP QSPQQLVVLP IGTKAPLPPA RKPDSPKSRS RSNVETKDAT  120
PKKQKQCKLC NCKHSRCLKL YCECFASGVY CDGCNCTNCH NNVEHEASRR EAVETTLERN  180
PNAFRPKIAN SPHGTRESRD EIGELVMLGK HNKGCHCKKS GCLKKYCECF QANILCSENC  240
KCMDCKNFEG SEERQALFHG DHANNIAYIQ QAANAAITGA IGSSGYACLP VSKKRKGPEL  300
GFGPVGKDSP LNSIPQLHQA NNIMSSGMST SSPFPAAHVG SPVASGPSKF SFRSLLADLI  360
QPNDLKELCS VLVVLTSEVA KIQAEQRSDE KQINDPQQTS RASSSGDGVQ HQKAEEKAAD  420
GECGSSNQSD RSVHDSSNSN SSDMTRARPM SPGTLALMCD EQDTMFMGAG LADGSAAHDC  480
NTSSHVPDRS LSEVYIEQER IVLTKFRDCL NKLITLGEIK ETKLTSRSES EVGNQNQSNN  540
FTSNSGCQQR SISNGVVKNV ALSAPRIPPA CTAAHHPNND LPLKILPVPK NRKSKPQIDR  600
EV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-31	128	259	12	132	Protein lin-54 homolog
5fd3_B	2e-31	128	259	12	132	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681811	0.0	LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142567.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5
Refseq	XP_011660288.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	1e-176	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A0A0LY61	0.0	A0A0A0LY61_CUCSA; Uncharacterized protein
STRING	XP_004142567.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2626	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-145	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Cucsa.332360.1
Entrez Gene	101222405

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]