PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.327970.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 144aa    MW: 16747.3 Da    PI: 9.2738
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.327970.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.7e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs +gklye+ss
  Cucsa.327970.3  9 KKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSARGKLYEFSS 59
                    78***********************************************96 PP

2K-box66.96.8e-23841421169
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                      +++e+++qe+ kLk+e+e Lq +qR++lGe+L++L+ keL qLe qLe slk+iRs+K
  Cucsa.327970.3  84 PKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLETKELDQLEIQLEMSLKQIRSTK 142
                     5789*****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.927161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.14E-41278No hitNo description
SuperFamilySSF554553.14E-32279IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1886142IPR002487Transcription factor, K-box
PROSITE profilePS5129711.50387143IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MGRGRVELKK IENKINRQVT FTKRRNGLLK KAYELSILCD AEVALIIFSA RGKLYEFSSS  60
PSIAKTLERY ERHSYGALEA SLPPKDTERW YQEYLKLKAE VEALQYSQRR FLGEELDDLE  120
TKELDQLEIQ LEMSLKQIRS TKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-21174173MEF2 CHIMERA
6byy_B7e-21174173MEF2 CHIMERA
6byy_C7e-21174173MEF2 CHIMERA
6byy_D7e-21174173MEF2 CHIMERA
6bz1_A8e-21174173MEF2 CHIMERA
6bz1_B8e-21174173MEF2 CHIMERA
6bz1_C8e-21174173MEF2 CHIMERA
6bz1_D8e-21174173MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818232e-91LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132572e-91LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657406.13e-98PREDICTED: MADS-box protein CMB1
RefseqXP_011657407.13e-98PREDICTED: MADS-box protein CMB1
SwissprotQ396858e-69CMB1_DIACA; MADS-box protein CMB1
TrEMBLA0A1S4DVG42e-93A0A1S4DVG4_CUCME; MADS-box protein CMB1
STRINGXP_004144258.11e-97(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-56MIKC_MADS family protein