PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.327970.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24645.7 Da PI: 5.2151 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.4 | 5.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs +gklye+ss Cucsa.327970.2 9 KKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSARGKLYEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 68.2 | 2.8e-23 | 84 | 151 | 11 | 78 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 +++e+++qe+ kLk+e+e Lq +qR++lGe+L++L+ keL qLe qLe slk+iRs+K e + i+ Cucsa.327970.2 84 PKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLETKELDQLEIQLEMSLKQIRSTKLEESSAAIH 151 57899******************************************************886666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.927 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.44E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 8.76E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.2E-18 | 86 | 147 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.607 | 87 | 197 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRGRVELKK IENKINRQVT FTKRRNGLLK KAYELSILCD AEVALIIFSA RGKLYEFSSS 60 PSIAKTLERY ERHSYGALEA SLPPKDTERW YQEYLKLKAE VEALQYSQRR FLGEELDDLE 120 TKELDQLEIQ LEMSLKQIRS TKLEESSAAI HHTSWDSSEP NNLQYCRQPE AFLQLNNNII 180 ALENSYNPTE VTNEENVVNS GADGNGLSSH WMLL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 4e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 3e-91 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 3e-91 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657406.1 | 1e-151 | PREDICTED: MADS-box protein CMB1 | ||||
Refseq | XP_011657407.1 | 1e-151 | PREDICTED: MADS-box protein CMB1 | ||||
Swissprot | Q39685 | 9e-72 | CMB1_DIACA; MADS-box protein CMB1 | ||||
TrEMBL | A0A1S4DVG4 | 1e-120 | A0A1S4DVG4_CUCME; MADS-box protein CMB1 | ||||
STRING | XP_004144258.1 | 1e-151 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03710.3 | 4e-55 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.327970.2 |