PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.327970.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28033.6 Da    PI: 5.8024
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.327970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.27.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs +gklye+ss
  Cucsa.327970.1  9 KKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSARGKLYEFSS 59
                    68***********************************************96 PP
2K-box95.68e-328417311100
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++e+++qe+ kLk+e+e Lq +qR++lGe+L++L+ keL qLe qLe slk+iRs+K + +++q+++lqkke++l e+n+aLrkklee
  Cucsa.327970.1  84 PKDTERWYQEYLKLKAEVEALQYSQRRFLGEELDDLETKELDQLEIQLEMSLKQIRSTKRQTMFDQLSDLQKKEDKLLETNQALRKKLEE 173
                     57899**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.927161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.33E-42278No hitNo description
SuperFamilySSF554551.15E-31279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2686171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.26387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRVELKK IENKINRQVT FTKRRNGLLK KAYELSILCD AEVALIIFSA RGKLYEFSSS  60
PSIAKTLERY ERHSYGALEA SLPPKDTERW YQEYLKLKAE VEALQYSQRR FLGEELDDLE  120
TKELDQLEIQ LEMSLKQIRS TKRQTMFDQL SDLQKKEDKL LETNQALRKK LEESSAAIHH  180
TSWDSSEPNN LQYCRQPEAF LQLNNNIIAL ENSYNPTEVT NEENVVNSGA DGNGLSSHWM  240
LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-21751711101Developmental protein SEPALLATA 3
4ox0_B4e-21751711101Developmental protein SEPALLATA 3
4ox0_C4e-21751711101Developmental protein SEPALLATA 3
4ox0_D4e-21751711101Developmental protein SEPALLATA 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818234e-91LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132574e-91LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657406.11e-179PREDICTED: MADS-box protein CMB1
RefseqXP_011657407.11e-179PREDICTED: MADS-box protein CMB1
SwissprotQ396852e-89CMB1_DIACA; MADS-box protein CMB1
TrEMBLA0A1S4DVG41e-146A0A1S4DVG4_CUCME; MADS-box protein CMB1
STRINGXP_004144258.11e-178(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.23e-73MIKC_MADS family protein