PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.325250.4

Common Name

Csa_6G309970, LOC101211298

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CAMTA

Protein Properties

Length: 915aa MW: 103772 Da PI: 7.7439

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.325250.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.1	1.2e-51	35	150	4	118
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e ++rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ve +++yYah+ + ptf rr Cucsa.325250.4 35 EaSARWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRR 129 4589***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+++le+ivlvhy+e++ Cucsa.325250.4 130 CYWLLDKTLEHIVLVHYRETQ 150 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.304	29	155	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.0E-73	32	150	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-45	35	148	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.4E-8	356	456	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.24E-17	367	454	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.2E-8	368	453	IPR002909	IPT domain
CDD	cd00102	1.15E-4	368	454	No hit	No description
CDD	cd00204	2.07E-16	529	663	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.9E-17	553	666	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.9E-7	553	633	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.44E-19	561	666	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.016	571	636	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	8.9E-6	604	633	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.487	604	636	IPR002110	Ankyrin repeat
SMART	SM00248	3100	643	672	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.02E-5	713	818	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.577	715	744	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	64	767	789	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	768	795	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.028	790	812	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.633	791	815	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.016	793	812	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	9.5	868	890	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.407	870	898	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MSLSMKADVQ GSLVGSEIHG FHTLQDLDVE NIREEASARW LRPNEIHAIL CNYKYFTIHV 60 KPVNLPKSGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNV ERIHVYYAHG 120 LDSPTFVRRC YWLLDKTLEH IVLVHYRETQ ENSPSTSLNS NSGSVSNPST PWLLSEELDS 180 KATHVYSVGE NELSEPSDTT TVMTHEQRLH EINTLEWDDL LVKDEPFKPA IHKGDKLSCF 240 DQQNQVPINA TSNLLGEMSS FSNPVESTGR ANGNISFTGS ANLLLGGQTN LNVEKRESIA 300 INSTDNLLDE RLQSQDSFGR WINEVIIESP GSVIDPAIEP SISYVHNSYR DSTLYHSQTL 360 ATEQIFNITD VSPSWAFSTE KTKILIIGYF HNDFVHLAKS NLLVVCGDTS VNVDFVQPGV 420 YRCLVPPHAP GLVHLYVSVD GHKPISQALN FEYRAPNLEV PVVASEQSQK WEEFQIQMRL 480 AHMLFSTSKI LSIISTKLLP TALQEAKKLA VKTADISDSW IYLLKSITEN RTPFQQAREG 540 VLEIVLRSRL REWLIERVAE GAKKSTEFDV NGQGVIHLCA ILGYTWAVHL FDWAGLSINF 600 RDKFGWTALH WAAYYGRERM VAVLLSAGAK PNLVTDPSSK NPLGCTAADL ASMNGYDGLA 660 AYLSEKALVS HFKEMSLAGN VSGSLDTSST ITDTSDCISE EQMYMKETLA AYRTAADAAS 720 RIQAAFREHS LKQRSDRIEL SSPEDEARSI IAAMKIQHAY RNFETRKKMA AAARIQYRFR 780 TWKIRKDFLN MRRQTIRIQA AFRGFQVRRQ YRKIVWSVGV LEKAILRWRL KRKGFRGLQV 840 APTEMVEKQQ SDVEEDFYLV SQKQAEERVE RAVVRVQAMF RSKKAQEEYR RMRLTCDEAA 900 LEYEVLSHPV YGND*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MSLSMKADVQ GSLVGSEIHG FHTLQDLDVE NIREEASARW LRPNEIHAIL CNYKYFTIHV  60
KPVNLPKSGT IVLFDRKMLR NFRKDGHNWK KKKDGKTVKE AHEHLKVGNV ERIHVYYAHG  120
LDSPTFVRRC YWLLDKTLEH IVLVHYRETQ ENSPSTSLNS NSGSVSNPST PWLLSEELDS  180
KATHVYSVGE NELSEPSDTT TVMTHEQRLH EINTLEWDDL LVKDEPFKPA IHKGDKLSCF  240
DQQNQVPINA TSNLLGEMSS FSNPVESTGR ANGNISFTGS ANLLLGGQTN LNVEKRESIA  300
INSTDNLLDE RLQSQDSFGR WINEVIIESP GSVIDPAIEP SISYVHNSYR DSTLYHSQTL  360
ATEQIFNITD VSPSWAFSTE KTKILIIGYF HNDFVHLAKS NLLVVCGDTS VNVDFVQPGV  420
YRCLVPPHAP GLVHLYVSVD GHKPISQALN FEYRAPNLEV PVVASEQSQK WEEFQIQMRL  480
AHMLFSTSKI LSIISTKLLP TALQEAKKLA VKTADISDSW IYLLKSITEN RTPFQQAREG  540
VLEIVLRSRL REWLIERVAE GAKKSTEFDV NGQGVIHLCA ILGYTWAVHL FDWAGLSINF  600
RDKFGWTALH WAAYYGRERM VAVLLSAGAK PNLVTDPSSK NPLGCTAADL ASMNGYDGLA  660
AYLSEKALVS HFKEMSLAGN VSGSLDTSST ITDTSDCISE EQMYMKETLA AYRTAADAAS  720
RIQAAFREHS LKQRSDRIEL SSPEDEARSI IAAMKIQHAY RNFETRKKMA AAARIQYRFR  780
TWKIRKDFLN MRRQTIRIQA AFRGFQVRRQ YRKIVWSVGV LEKAILRWRL KRKGFRGLQV  840
APTEMVEKQQ SDVEEDFYLV SQKQAEERVE RAVVRVQAMF RSKKAQEEYR RMRLTCDEAA  900
LEYEVLSHPV YGND*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681924	0.0	LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657271.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0A0KCD9	0.0	A0A0A0KCD9_CUCSA; Uncharacterized protein
STRING	XP_004161401.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Cucsa.325250.4
Entrez Gene	101211298

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]