PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.323040.2 | ||||||||
Common Name | Csa_3G002330, LOC101203410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 202aa MW: 22774.2 Da PI: 6.7916 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69 | 5.8e-22 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Cucsa.323040.2 22 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELgqhgQISESNVYNWFQNRRARSKR 82 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.3 | 7.1e-33 | 21 | 84 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i++it+eL ++G+i++ NV++WFQNr+aR+++kq Cucsa.323040.2 21 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQ 84 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-19 | 16 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.273 | 18 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-20 | 18 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-16 | 20 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.44E-14 | 22 | 84 | No hit | No description |
Pfam | PF00046 | 8.0E-20 | 22 | 82 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MRLGNMYCEP LMTSSSHKIT SRQRWTPTPV QLQILERIFD QGNGTPSKQK IKEITSELGQ 60 HGQISESNVY NWFQNRRARS KRKQQSAAPA YGESEVETEV ESPKDKKTKP VDFQTNQSSA 120 PLGDDMCFQS PEMSSELHFL DPNTNKADTL FPSNGSLKTA RSFSQMSFYE AGNEQLTGKI 180 ETPENYSIYQ QAEGYNMTGR P* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 75 | 83 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146172.1 | 1e-150 | PREDICTED: WUSCHEL-related homeobox 13 | ||||
Swissprot | O81788 | 6e-59 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A0A0L4U3 | 1e-148 | A0A0A0L4U3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146172.1 | 1e-149 | (Cucumis sativus) | ||||
STRING | XP_004159737.1 | 1e-149 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-61 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.323040.2 |
Entrez Gene | 101203410 |
Publications ? help Back to Top | |||
---|---|---|---|
|