PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.323040.2
Common NameCsa_3G002330, LOC101203410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 202aa    MW: 22774.2 Da    PI: 6.7916
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.323040.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox695.8e-222282257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Cucsa.323040.2 22 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELgqhgQISESNVYNWFQNRRARSKR 82
                    89*****************99**************************************97 PP

2Wus_type_Homeobox101.37.1e-332184265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL ++G+i++ NV++WFQNr+aR+++kq
     Cucsa.323040.2 21 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQ 84
                       789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-191688IPR009057Homeodomain-like
PROSITE profilePS5007115.2731883IPR001356Homeobox domain
SuperFamilySSF466896.84E-201886IPR009057Homeodomain-like
SMARTSM003892.6E-162087IPR001356Homeobox domain
CDDcd000861.44E-142284No hitNo description
PfamPF000468.0E-202282IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MRLGNMYCEP LMTSSSHKIT SRQRWTPTPV QLQILERIFD QGNGTPSKQK IKEITSELGQ  60
HGQISESNVY NWFQNRRARS KRKQQSAAPA YGESEVETEV ESPKDKKTKP VDFQTNQSSA  120
PLGDDMCFQS PEMSSELHFL DPNTNKADTL FPSNGSLKTA RSFSQMSFYE AGNEQLTGKI  180
ETPENYSIYQ QAEGYNMTGR P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146172.11e-150PREDICTED: WUSCHEL-related homeobox 13
SwissprotO817886e-59WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A0A0L4U31e-148A0A0A0L4U3_CUCSA; Uncharacterized protein
STRINGXP_004146172.11e-149(Cucumis sativus)
STRINGXP_004159737.11e-149(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-61WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]