PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.323040.1 | ||||||||
Common Name | Csa_3G002330, LOC101203410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WOX | ||||||||
Protein Properties | Length: 255aa MW: 28948.4 Da PI: 6.7024 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.4 | 9e-22 | 103 | 163 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Cucsa.323040.1 103 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELgqhgQISESNVYNWFQNRRARSKR 163 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 100.6 | 1.1e-32 | 102 | 165 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i++it+eL ++G+i++ NV++WFQNr+aR+++kq Cucsa.323040.1 102 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQ 165 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-19 | 97 | 169 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.273 | 99 | 164 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-19 | 99 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-16 | 101 | 168 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-19 | 103 | 163 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.51E-15 | 103 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MMEWEKPEQQ NPYHHHHHNP PLCDDHLHHL TGTTAAGALY VKVMTDDQLE TLRKQIAVYA 60 TICEQLVEMH KTLTAHQDLT GMRLGNMYCE PLMTSSSHKI TSRQRWTPTP VQLQILERIF 120 DQGNGTPSKQ KIKEITSELG QHGQISESNV YNWFQNRRAR SKRKQQSAAP AYGESEVETE 180 VESPKDKKTK PVDFQTNQSS APLGDDMCFQ SPEMSSELHF LDPNTNKADT LFPSNGSLKT 240 ARSFSQMSFY EGMP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 164 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146172.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 13 | ||||
Swissprot | O81788 | 3e-84 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A0A0L4U3 | 0.0 | A0A0A0L4U3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146172.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004159737.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-85 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.323040.1 |
Entrez Gene | 101203410 |
Publications ? help Back to Top | |||
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