PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.323040.1
Common NameCsa_3G002330, LOC101203410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 255aa    MW: 28948.4 Da    PI: 6.7024
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.323040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.49e-22103163257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Cucsa.323040.1 103 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELgqhgQISESNVYNWFQNRRARSKR 163
                     89*****************99**************************************97 PP

2Wus_type_Homeobox100.61.1e-32102165265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL ++G+i++ NV++WFQNr+aR+++kq
     Cucsa.323040.1 102 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQ 165
                        789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-1997169IPR009057Homeodomain-like
PROSITE profilePS5007115.27399164IPR001356Homeobox domain
SuperFamilySSF466891.11E-1999167IPR009057Homeodomain-like
SMARTSM003892.6E-16101168IPR001356Homeobox domain
PfamPF000461.2E-19103163IPR001356Homeobox domain
CDDcd000863.51E-15103165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMEWEKPEQQ NPYHHHHHNP PLCDDHLHHL TGTTAAGALY VKVMTDDQLE TLRKQIAVYA  60
TICEQLVEMH KTLTAHQDLT GMRLGNMYCE PLMTSSSHKI TSRQRWTPTP VQLQILERIF  120
DQGNGTPSKQ KIKEITSELG QHGQISESNV YNWFQNRRAR SKRKQQSAAP AYGESEVETE  180
VESPKDKKTK PVDFQTNQSS APLGDDMCFQ SPEMSSELHF LDPNTNKADT LFPSNGSLKT  240
ARSFSQMSFY EGMP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156164RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146172.10.0PREDICTED: WUSCHEL-related homeobox 13
SwissprotO817883e-84WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A0A0L4U30.0A0A0A0L4U3_CUCSA; Uncharacterized protein
STRINGXP_004146172.10.0(Cucumis sativus)
STRINGXP_004159737.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.14e-85WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]