PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.321740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LSD | ||||||||
Protein Properties | Length: 110aa MW: 11643.6 Da PI: 8.1648 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.2 | 2.8e-13 | 2 | 26 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC++lL YP+GA+s++CalC++V Cucsa.321740.1 2 CSGCKNLLIYPAGATSICCALCHAV 26 ************************9 PP | |||||||
2 | zf-LSD1 | 36.8 | 6.2e-12 | 41 | 65 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC tlL+Y rGA+sV+C++C t+ Cucsa.321740.1 41 CSGCYTLLMYSRGAKSVQCSCCRTI 65 ***********************97 PP | |||||||
3 | zf-LSD1 | 34.3 | 3.9e-11 | 79 | 103 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y A sV+C+lC++V Cucsa.321740.1 79 CGNCRVLLMYQCEAHSVKCTLCNFV 103 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.5E-11 | 2 | 28 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-10 | 2 | 26 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.2E-12 | 39 | 66 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-10 | 41 | 65 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-8 | 76 | 106 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-9 | 79 | 103 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MCSGCKNLLI YPAGATSICC ALCHAVTPVP TSGLTMARLV CSGCYTLLMY SRGAKSVQCS 60 CCRTINAASE ANQMAHINCG NCRVLLMYQC EAHSVKCTLC NFVTSVGILX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 1e-52 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 1e-52 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650347.1 | 2e-72 | PREDICTED: protein LSD1-like isoform X1 | ||||
Swissprot | Q0J7V9 | 6e-51 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A1S3BKC0 | 4e-69 | A0A1S3BKC0_CUCME; protein LOL1 isoform X1 | ||||
STRING | XP_004164419.1 | 3e-72 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 2e-52 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.321740.1 |
Publications ? help Back to Top | |||
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