PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.320970.1 | ||||||||
Common Name | Csa_3G019980, LOC101210780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 28211.8 Da PI: 8.6564 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C++sF++ L H++ H Cucsa.320970.1 6 HKCRLCSRSFTNGRALGGHMKAH 28 79******************998 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.3e-05 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F+++ L H +++ Cucsa.320970.1 144 FRCGKCRKTFRSNRALFGHRKVC 166 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.12E-5 | 2 | 30 | No hit | No description |
Pfam | PF13912 | 1.1E-6 | 5 | 29 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.048 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.806 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.4E-8 | 142 | 213 | No hit | No description |
SMART | SM00355 | 33 | 144 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.806 | 144 | 173 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.028 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.056 | 191 | 213 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 191 | 213 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.0E-11 | 191 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 213 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MEEERHKCRL CSRSFTNGRA LGGHMKAHLA TFSIEHQKTF KSPDLEMLSA NGSISIVQDR 60 ESETESKNPT RRRSKRTRRL NTESLPSPSP EPASSISDTS PEEDVAICLV MLSMEKPSSW 120 KDQSRTPESE KSTAAMVGRV RKSFRCGKCR KTFRSNRALF GHRKVCRKEG EEEDGEEEEK 180 GMINGGNWKI FKCPYCCKVF GSGQALGGHK RSHIQGSIRT AIDRSSSKLE IGLDLNLPAP 240 LEEDDYSVVS DV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147254.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A0A0L275 | 0.0 | A0A0A0L275_CUCSA; Uncharacterized protein | ||||
STRING | XP_004162353.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-30 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.320970.1 |
Entrez Gene | 101210780 |
Publications ? help Back to Top | |||
---|---|---|---|
|