PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.320850.2
Common NameCsa_3G020600
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 771aa    MW: 84641.7 Da    PI: 5.5139
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.320850.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.35.5e-1034087692374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++ ++  pp+  ++ +++ ++ a+k+fse+sP+++f ++
  Cucsa.320850.2 408 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLM--NNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNF 500
                     679*************************************************98..6667788888888999*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t+Nqa+lea++  +r+Hi+Dfdi+ G+QW++++q+L+ R++g+psl+iT+++sp++++  el  ++e+L++fA+ +g++fef+v+   ++++l+ 
  Cucsa.320850.2 501 TCNQALLEALDDIDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVV---NFDSLNQ 592
                     ************************************************************************************8...6666665 PP

            GRAS 192 eeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +++     r +++Ea+aVn+ l   +  ++++ l+s    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++
  Cucsa.320850.2 593 NSFslpfpRSSENEAVAVNFPLWCSS--NQPAMLPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAI-NMNSDA 680
                     555223445555********995544..45777777....*********************************************887.7899** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +k+Er+ll+++i++ v  + ++     e++  W+  + +aGF+pv++s+++++qa+++ ++++++g++ve++++slvl+W++r+L+s+SaWr
  Cucsa.320850.2 681 VNKIERFLLQPRIESTVLGRLRA----PERMPPWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWR 769
                     ******************99998....999**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.46381749IPR005202Transcription factor GRAS
PfamPF035141.9E-100408769IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MQRKMGKGEL EFSAAFSSSS PICSGFAEKW VKKGEEQQEQ ELDEEQEGFS YFALPNNEPT  60
SVLHMRSPSP PTSASTLSSS FGGGGGGGCV PSLPPETPAV EPVAGAGVGN VIFPGGLERC  120
GVGLEDLESM WSETAGPEPS FLRWFAGDVE DPSLGSKSVL ANGNIPFDLD GNAGIGIVDQ  180
GSEFDTGSGN VLANINPNLS FPLAACAGFS DVNGNNKSFN RTTCGGVVNY KSSSLGSNNR  240
HGNFNVQNPI FTGSLENLVV PVSGMIYPQQ LQPFESPDEK PQNLNTQVLL NQHQQPQNPS  300
FFVPLTFGQQ EQQLQPQLKR RNSSGGLDPN PNGQILKVPF MDPGNEIFLR NHQLQVLQQQ  360
QQQQLGYPPG LQFLPQQKAM SPKPKVVGLG DEMSYHNPPQ QQHQHALLDQ LYKAAELVGT  420
GNFSHAQGIL ARLNHQLSPV GKPLQRAAFY FKEALQLLLL MNNPVNPPPP RCPTPFDVIF  480
KMGAYKVFSE ISPLIQFVNF TCNQALLEAL DDIDRIHIVD FDIGFGAQWA SFMQELSLRN  540
RGAPSLKITA FASPSTHHPI ELGLMRENLT QFANDIGISF EFEVVNFDSL NQNSFSLPFP  600
RSSENEAVAV NFPLWCSSNQ PAMLPSLLRF IKQLSPKIVV SLDRGCDRSD LPFPQHMLQA  660
LQSYINLLES LDAINMNSDA VNKIERFLLQ PRIESTVLGR LRAPERMPPW KTLFASAGFT  720
PVTFSNFTET QAECVAKRTS VRGFHVEKRQ ASLVLCWQRR ELISASAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3442676922375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147202.10.0PREDICTED: scarecrow-like protein 22
SwissprotO813161e-128SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0A0L5J30.0A0A0A0L5J3_CUCSA; Uncharacterized protein
STRINGXP_004147202.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-127GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  5. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]