PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.320850.1
Common NameCsa_3G020600
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 775aa    MW: 85071.1 Da    PI: 5.5024
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.320850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.35.6e-1034127732374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++ ++  pp+  ++ +++ ++ a+k+fse+sP+++f ++
  Cucsa.320850.1 412 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLM--NNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNF 504
                     679*************************************************98..6667788888888999*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t+Nqa+lea++  +r+Hi+Dfdi+ G+QW++++q+L+ R++g+psl+iT+++sp++++  el  ++e+L++fA+ +g++fef+v+   ++++l+ 
  Cucsa.320850.1 505 TCNQALLEALDDIDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVV---NFDSLNQ 596
                     ************************************************************************************8...6666665 PP

            GRAS 192 eeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +++     r +++Ea+aVn+ l   +  ++++ l+s    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++
  Cucsa.320850.1 597 NSFslpfpRSSENEAVAVNFPLWCSS--NQPAMLPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAI-NMNSDA 684
                     555223445555********995544..45777777....*********************************************887.7899** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +k+Er+ll+++i++ v  + ++     e++  W+  + +aGF+pv++s+++++qa+++ ++++++g++ve++++slvl+W++r+L+s+SaWr
  Cucsa.320850.1 685 VNKIERFLLQPRIESTVLGRLRA----PERMPPWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWR 773
                     ******************99998....999**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.46385753IPR005202Transcription factor GRAS
PfamPF035141.9E-100412773IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MRGISFHFQG KGELEFSAAF SSSSPICSGF AEKWVKKGEE QQEQELDEEQ EGFSYFALPN  60
NEPTSVLHMR SPSPPTSAST LSSSFGGGGG GGCVPSLPPE TPAVEPVAGA GVGNVIFPGG  120
LERCGVGLED LESMWSETAG PEPSFLRWFA GDVEDPSLGS KSVLANGNIP FDLDGNAGIG  180
IVDQGSEFDT GSGNVLANIN PNLSFPLAAC AGFSDVNGNN KSFNRTTCGG VVNYKSSSLG  240
SNNRHGNFNV QNPIFTGSLE NLVVPVSGMI YPQQLQPFES PDEKPQNLNT QVLLNQHQQP  300
QNPSFFVPLT FGQQEQQLQP QLKRRNSSGG LDPNPNGQIL KVPFMDPGNE IFLRNHQLQV  360
LQQQQQQQLG YPPGLQFLPQ QKAMSPKPKV VGLGDEMSYH NPPQQQHQHA LLDQLYKAAE  420
LVGTGNFSHA QGILARLNHQ LSPVGKPLQR AAFYFKEALQ LLLLMNNPVN PPPPRCPTPF  480
DVIFKMGAYK VFSEISPLIQ FVNFTCNQAL LEALDDIDRI HIVDFDIGFG AQWASFMQEL  540
SLRNRGAPSL KITAFASPST HHPIELGLMR ENLTQFANDI GISFEFEVVN FDSLNQNSFS  600
LPFPRSSENE AVAVNFPLWC SSNQPAMLPS LLRFIKQLSP KIVVSLDRGC DRSDLPFPQH  660
MLQALQSYIN LLESLDAINM NSDAVNKIER FLLQPRIEST VLGRLRAPER MPPWKTLFAS  720
AGFTPVTFSN FTETQAECVA KRTSVRGFHV EKRQASLVLC WQRRELISAS AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3443077322375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147202.10.0PREDICTED: scarecrow-like protein 22
SwissprotO813161e-128SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0A0L5J30.0A0A0A0L5J3_CUCSA; Uncharacterized protein
STRINGXP_004147202.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-126GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  5. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]