PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.318610.1 | ||||||||
Common Name | Csa_2G439230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 34108.4 Da PI: 6.5082 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.4 | 1.9e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g++R++k+c++rw +yl Cucsa.318610.1 15 KGPWTPEEDRKLVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E+++++++++ lG++ W+ Ia++++ gRt++++k++w+++l Cucsa.318610.1 68 RGNFSDQEEQIIINLHASLGNK-WSIIASHLP-GRTDNEIKNFWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.906 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-32 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-18 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.7 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MFGRSPTPEE NGVKKGPWTP EEDRKLVDYI EKHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGN FSDQEEQIII NLHASLGNKW SIIASHLPGR TDNEIKNFWN THLKKKLLQM 120 GIDPVTHMPI TDRHHLNTLS NLHHLLSLHT SPWDNPLRLQ NDATQLAKAQ LLQNLLQLLA 180 SQSSLSISNN NLFNTQQILD LNYNLPIGSF FQNIPINIEP PQGPLSCDDY TAATDGALGF 240 ENDNDRIKTF YDMNQRLNSL PNLIPASPEC SKIPTAIENN WDDDLMDVEA SDSSWKHVIE 300 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681914 | 0.0 | LN681914.1 Cucumis melo genomic scaffold, anchoredscaffold00050. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650084.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9S9Z2 | 4e-82 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0A0LND6 | 0.0 | A0A0A0LND6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148106.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004169078.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-77 | myb domain protein 93 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.318610.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|