PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.313510.1
Common NameCsa_3G910660, LOC101203906
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 310aa    MW: 34330.4 Da    PI: 8.99
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.313510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-07250292343
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       W+  Ed  l++a k ++++   +W++Ia+ ++ g+t   c  r
   Cucsa.313510.1 250 GWSSGEDIALLNALKAFPKDsamRWEKIAAAVP-GKTKAACMKR 292
                      6********************************.******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.368156197IPR017877Myb-like domain
SMARTSM007171.3160213IPR001005SANT/Myb domain
SMARTSM007171.1E-4247299IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-5248292IPR009057Homeodomain-like
SuperFamilySSF466892.34E-9248293IPR009057Homeodomain-like
PfamPF002498.0E-6249292IPR001005SANT/Myb domain
PROSITE profilePS500906.76249292IPR017877Myb-like domain
CDDcd001672.17E-5251292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFLDEDAKP RFLFHSRANT SPAMELQSDS HSTKLFLSIT LLISSIFLIL SIVFVQFEPF  60
RSLLIWLSLS LLLGPFAPIS LTGGDIRVGR GPILEIPDDE PEVEDDSKKK PVQKRSKPRR  120
STDEIAVASI EVAEKSSAKI DNRNGVGHRS SKNGVDFAIE EAEWDDAELG FLKKQLAKHP  180
VGKPRRWEII AEAFGGRHKV ENVIKMAKEM GEKKLGDEDS YAQFLKNRKP MDKRIENVNE  240
EATTAAVAGG WSSGEDIALL NALKAFPKDS AMRWEKIAAA VPGKTKAACM KRVGELKKDF  300
RNSKAGNEI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148501.10.0PREDICTED: dnaJ homolog subfamily C member 2
RefseqXP_011652670.10.0PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ24e-79MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A0A0LHE10.0A0A0A0LHE1_CUCSA; Uncharacterized protein
STRINGXP_004163760.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-76MYB_related family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]